Construct: ORF ccsbBroad304_12757

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002650.1_s304c1, BRDN0000404920
Derived from:
ccsbBroadEn_12757
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMTC1 (83857)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12757
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020007.2 36.7% 36.5% 1_1164del;1223_1231delGGTACAAGC
2 human 83857 TMTC1 transmembrane O-mannosyltra... XM_024449218.1 32.1% 32% 1_1425del;1484_1492delGGTACAAGC
3 human 83857 TMTC1 transmembrane O-mannosyltra... NM_175861.3 29.3% 29.1% 1_1632del;1691_1699delGGTACAAGC
4 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020005.1 27.9% 27.7% 1_1749del;1808_1816delGGTACAAGC
5 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020004.1 25.9% 25.8% 1_1935del;1994_2002delGGTACAAGC
6 human 83857 TMTC1 transmembrane O-mannosyltra... NM_001193451.2 25.7% 25.6% 1_1956del;2015_2023delGGTACAAGC
7 human 83857 TMTC1 transmembrane O-mannosyltra... XM_017020003.1 25.5% 25.4% 1_1974del;2033_2041delGGTACAAGC
8 human 83857 TMTC1 transmembrane O-mannosyltra... NM_001367875.2 24% 23.9% 1_2142del;2201_2209delGGTACAAGC
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
747
ORF length:
681
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggt gaacttggga agactctaca ggtcactggg agagaacagc atggctgaag
121aatgcgccct gcaggtggca cacaaagctg agatattgtc acctttggga gcactgtatt
181acaacactgg ccgatacgaa gaggctttgc agatttacca ggaagctgca gcacttcagc
241cttctcagag ggagctccgc ttggcactgg ctcaggtttt ggccgtgatg ggtcagacaa
301aagaagctga aaagatgacc aatcacattg tgtcagagga gaccggatgc cttgaatgct
361atcgcctctt gtcagccatc tatagcaagc aggagaacca cgacaaggca cttgatgcta
421tagacaaggc tctccagctg aaaccaaagg acccaaaagt catttctgaa ctttttttca
481caaaaggaaa ccaattaaga gagcagaacc ttctcgacaa agcttttgag agctatagag
541tggctgtgca actaaaccca gaccaagcac aggcctggat gaacatgggt ggcatccaac
601acatcaaggg aaaatatgtg tctgcaagag cttattatga gagagcctta cagctggttc
661cagacagcaa actgctgaag gaaaatcttg ccaaattgga tcgcctagaa aaacgattac
721aagaagttcg agaaaaggat caaacatacc caactttctt gtacaaagtg gttggtaagc
781ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
841ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)