Construct: ORF ccsbBroad304_12771

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002735.1_s304c1, BRDN0000401002
Derived from:
ccsbBroadEn_12771
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HDHD2 (84064)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12771
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84064 HDHD2 haloacid dehalogenase like ... NM_001318765.2 100% 100%
2 human 84064 HDHD2 haloacid dehalogenase like ... XM_006722557.2 100% 100%
3 human 84064 HDHD2 haloacid dehalogenase like ... XM_017026040.1 83% 81.6% (many diffs)
4 human 84064 HDHD2 haloacid dehalogenase like ... NM_032124.5 65.2% 65.2% 1_270del
5 human 84064 HDHD2 haloacid dehalogenase like ... XM_011526227.2 65.2% 65.2% 1_270del
6 human 84064 HDHD2 haloacid dehalogenase like ... XM_011526228.3 65.2% 65.2% 1_270del
7 human 84064 HDHD2 haloacid dehalogenase like ... XM_017026039.1 65.2% 65.2% 1_270del
8 human 84064 HDHD2 haloacid dehalogenase like ... XM_005258371.4 54.4% 53.2% (many diffs)
9 human 84064 HDHD2 haloacid dehalogenase like ... XM_024451272.1 54.4% 53.2% (many diffs)
10 mouse 76987 Hdhd2 haloacid dehalogenase-like ... NM_001039201.1 56.5% 59% (many diffs)
11 mouse 76987 Hdhd2 haloacid dehalogenase-like ... NM_029826.2 56.5% 59% (many diffs)
12 mouse 76987 Hdhd2 haloacid dehalogenase-like ... XM_006526442.3 56.5% 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
573
ORF length:
507
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gctagttgat gatcgggcac tacctgattt caaaggaata caaacaagtg
121atcctaatgc tgtggtcatg ggattggcac cagaacattt tcattatcaa attctgaatc
181aagcattccg gttactcctg gatggagcac ctctgatagc aatccacaaa gccaggtatt
241acaagaggaa agatggctta gccctggggc ctggaccatt tgtgactgct ttagagtatg
301ccacagatac caaagccaca gtcgtgggga aaccagagaa gacgttcttt ttggaagcat
361tgcggggcac tggctgtgaa cctgaggagg ctgtcatgat aggagatgat tgcagggatg
421atgttggtgg ggctcaagat gtcggcatgc tgggcatctt agtaaagact gggaaatatc
481gagcatcaga tgaagaaaaa attaatccac ctccttactt aacttgtgag agtttccctc
541atgctgtgga ccacattctg cagcacctat tgtgcccaac tttcttgtac aaagtggttg
601gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
661accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)