Construct: ORF ccsbBroad304_12841
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005980.1_s304c1, BRDN0000462427
- Derived from:
- ccsbBroadEn_12841
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MYO18B (84700)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12841
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84700 | MYO18B | myosin XVIIIB | XM_017029015.1 | 99.8% | 99.8% | (many diffs) |
| 2 | human | 84700 | MYO18B | myosin XVIIIB | NM_032608.7 | 99.8% | 99.7% | (many diffs) |
| 3 | human | 84700 | MYO18B | myosin XVIIIB | NM_001318245.2 | 99.8% | 99.7% | (many diffs) |
| 4 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530464.2 | 98.2% | 98.1% | (many diffs) |
| 5 | human | 84700 | MYO18B | myosin XVIIIB | XM_017029014.1 | 98.2% | 98.1% | (many diffs) |
| 6 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530458.2 | 98.1% | 98.1% | (many diffs) |
| 7 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530459.2 | 98.1% | 98.1% | (many diffs) |
| 8 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530461.2 | 98.1% | 98.1% | (many diffs) |
| 9 | human | 84700 | MYO18B | myosin XVIIIB | XM_017029012.1 | 98.1% | 98.1% | (many diffs) |
| 10 | human | 84700 | MYO18B | myosin XVIIIB | XM_017029013.1 | 98.1% | 98.1% | (many diffs) |
| 11 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530460.2 | 97.9% | 97.4% | (many diffs) |
| 12 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530465.2 | 95.1% | 95% | (many diffs) |
| 13 | human | 84700 | MYO18B | myosin XVIIIB | XM_011530466.2 | 80.2% | 78.9% | (many diffs) |
| 14 | human | 84700 | MYO18B | myosin XVIIIB | XM_017029017.1 | 66.9% | 66.9% | (many diffs) |
| 15 | human | 84700 | MYO18B | myosin XVIIIB | XM_017029016.1 | 66.9% | 66.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 7767
- ORF length:
- 7698
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggccatctca tcacgcctcg ccctgtggga gcagaagatt cgggaagagg 121 acaagagccc tccaccatcc tcgccccctc ctcttttctc tgtcatccca gggggcttca 181 ttaagcaact ggtccggggg actgaaaaag aggccaagga agcgagacag aggaagcagt 241 tagctgtcgc ctctccagaa cgagagatcc cagaaatttc catcagccaa cccaacagca 301 agtccagcag tggcaccaga tctggaagcc agcagatctc tcaggacgac cagtcaagct 361 ctcctgggag ctcagacatt ctgggcaagg agagcgaggg gtcccgcagc cccgaccctg 421 agcagatgac aagcatcaat ggtgagaagg cccaggagct gggctccagt gcgacaccaa 481 ccaaaaagac tgtccccttc aagaggggcg tgaggagggg tgatgtgttg ttgatggtgg 541 ccaagctgga cccggactca gccaagccag agaagactca tccccatgac gccccccctt 601 gcaagacctc tccccccgcc acagatactg gaaaggaaaa gaaaggggag acctctagga 661 ctccttgtgg ctcccaggcc agcaccgaga tcttggcccc gaaagctgag aagacccgga 721 ctgggggtct tggggaccca ggccaaggaa ctgtggcact gaaaaaaggc gaggagggtc 781 aaagcatagt ggggaagggg cttgggaccc ccaagaccac agagctgaaa gaggctgagc 841 cccagggcaa agacaggcag gggaccaggc cccaagccca agggcccggc gagggggtgc 901 gaccagggaa agcagagaag gagggagcag agcccacaaa cacggtggaa aaggggaatg 961 tctctaagga cgtagggagt gaagggaagc acgtaaggcc ccaaatccct gggagaaagt 1021 ggggaggttt cctgggaaga aggagtaagt gggacggtcc ccagaataag aaggacaaag 1081 aaggggtgct cttaagtaag gcagagaaga caggtgagcc tcagacccag atggagaaga 1141 caagccaagt gcagggcgag ttgggggacg atctgagaat gggggagaaa gcaggtgagc 1201 ttcggagcac gactgggaag gcaggtgagt cctgggataa gaaggaaaag atggggcaac 1261 cccagggtaa gtccgggaac gcaggtgaag ctcggagtca gacagagaag ggctgtgaag 1321 ccccaaagga ggtgagcaca atggtggagt cgccagcagc tcctgggaag ggaggctggc 1381 caggaagccg tgggcaggaa gcagaggagc cctgctcaag agcaggtgat ggggctggtg 1441 ccctggagac agagctggaa ggacccagcc agcctgctct ggagaaggat gcagaaaggc 1501 ctcggatacg gaaggagaac caagacgggc cagccccgca ggaggagggc aaaggaggcc 1561 agagcagaga ctcagaccag gctcctgagg acagatggta tgaggcagag aaagtctggc 1621 tggctcagaa ggatggattt actcttgcta cggtgctaaa gccagatgag ggaacagcag 1681 acctgccagc aggaagggtg agactttgca ttgatgctga caaaaccatc actgaggtgg 1741 atgaggagca tgtccatcgg gccaaccctc ctgagctgga ccaggtcgag gacctggcct 1801 ctctcatcag tgtcaacgaa tccagtgtcc tgaacacgct tctgcagcgc tacaaagctc 1861 agctgctgca cacctgcaca gggcctgatc tgattgtcct ccagccccgg gggccctcgg 1921 tgccttctgc agggaaggtg cccaagggcc gccgggatgg cctgcctgcc cacattggct 1981 ccatggcaca gcgggcatac tgggcgctgc tgaaccagcg gagagaccag agcattgtgg 2041 ccctgggccg gagtggcgct gggaagacca cctgctgtga gcaggtcctg gaacacctgg 2101 tggggatggc aggcagtgtg gatggcaggg tctcagtgga gaagatccga gccaccttca 2161 ctgtcctccg ggccttcggc tctgtgtcca tggcccacag ccgcagtgcc acccggttct 2221 ccatggtgat gtcgctggac ttcaacgcta caggccgcat cacagctgct cagctccaga 2281 caatgctttt ggagaagagc cgcgtggcac ggcagccgga aggggaaagt aacttcctgg 2341 ttttctccca gatgctggct ggattggact tggatctcag gacggagctg aacctgcacc 2401 agatggcaga tagcagctcc tttggcatgg gcgtgtggtc caagcctgaa gataaacaga 2461 aggcggcagc tgcctttgcc cagctccagg gtgccatgga gatgctgggc atctcagaga 2521 gcgagcagcg ggctgtttgg cgggtcctga cagccatcta ccacctgggc gcggcggggg 2581 cctgcaaagt gggtcggaag cagttcatga ggtttgagtg ggcaaactac gcagctgagg 2641 ccctgggctg cgagtatgag gagctgaaca cggccacctt caagcaccac cttcgacaga 2701 tcatccagca aatgacgttt gggccaagcc gatggggcct cgaggatgag gaaaccagct 2761 cagggctcaa gatgacagga gtggactgtg tggaggggat ggcctcgggc ctgtaccagg 2821 aactctttgc ggctgtggtc tcactcatca acagatcctt ttcctcccac catctctcca 2881 tggcctccat catggtggtg gactctccag gcttccagaa cccccggcac cagggcaagg 2941 accgggcggc cacctttgag gagctgtgcc acaactacgc ccatgagcgc ctgcagctgc 3001 tgttctacca gcggaccttt gtctccacgc tacagcgata tcaagaggaa ggtgttcctg 3061 tgcagtttga cctcccggac ccctccccag ggaccaccgt ggctgttgtg gatcaaaatc 3121 cctctcaggt ccgcttacca gctggaggag gtgcccagga tgccagaggc cttttctggg 3181 tcttagatga ggaagtccat gtagagggct ccagtgacag tgtggtgctc gagcgtctgt 3241 gtgctgcttt cgagaagaaa ggagctggga ctgaagggtc ctctgccctg cggacctgtg 3301 agcagcccct ccagtgtgag attttccacc agttgggatg ggaccctgtg cggtacgacc 3361 tcacgggctg gctccacaga gccaagccca acctctcggc cctggatgca ccccaggtcc 3421 tgcaacagtc aaaaagagag gagctgcgga gtctattcca ggcccgggcc aagctgcctc 3481 ctgtgtgccg ggctgtggca ggcctggagg gcacctccca gcaggccctg cagaggagcc 3541 gcatggtgag gaggaccttt gccagcagcc ttgccgcggt gaggaggaaa gccccgtgct 3601 cccagatcaa gctgcagatg gatgcgctga ccagcatgat caaaaggtcc cggctgcact 3661 ttatccactg cctggtacca aaccctgtgg tggaaagcag gagtgggcag gaatctccac 3721 caccaccgca gcctggtaga gacaagcctg gggcaggtgg acctctggcc ctggatatcc 3781 cagcactgag ggtccagctt gctgggttcc acatcctgga ggctctgcgt ctgcatagga 3841 caggctatgc tgaccacatg ggactcactc gcttccgccg gcaattccag gtgctggacg 3901 ctccactcct gaagaagctc atgtcgacct ccgagggaat agatgaaagg aaggccgtgg 3961 aggagctcct ggagaccctg gatctggaaa agaaggcggt ggctgtgggg cacagccaag 4021 tttttctcaa ggcaggtgtg atctccaggc ttgagaagca gcgagagaag ctggtatctc 4081 agagcatcgt tctcttccag gcggcttgca agggctttct gtctcgccag gaattcaaga 4141 agctgaagat tcgccgactg gctgcacagt gcatccagaa gaatgtggct gtgttcctcg 4201 cagtcaagga ctggccatgg tggcagctgc ttggttccct ccagcctcta cttagtgcca 4261 ccattggaac tgagcagctc cgagccaagg aggaggagct tacaacgcta agacggaagc 4321 tagaaaaatc agagaagttg cggaatgaac tccggcagaa cacagatctg ctagaaagca 4381 agattgctga cttgacctct gaccttgccg atgagcgctt caaaggtgat gtggcctgcc 4441 aggtgctgga gagtgagcgg gcagagcggc tacaggcctt ccgggaggtc caggagctca 4501 agagcaagca tgaacaagtc cagaaaaaac tgggagatgt gaataaacag ttggaagaag 4561 cccagcagaa aattcagttg aatgacttgg aaaggaatcc cactggagga gacgagtggc 4621 agatgcgctt cgactgtgct cagatggaga acgagttcct cagaaagcgt ctgcagcaat 4681 gcgaggagag gctggactcg gagctgacag ccaggaaaga gctggagcaa aagcttgggg 4741 agttgcaaag tgcttatgac ggggccaaga agatggctca ccaactgaag aggaagtgcc 4801 accatcttac ctgtgacctt gaggatacct gcgtcctgct agagaaccaa caaagtcgaa 4861 accatgagct ggagaagaag cagaagaagt ttgacctgca gctggcccag gccctaggtg 4921 agtcagtgtt tgagaagggt ctccgtgaga aagtgaccca ggagaacacc agtgtccggt 4981 gggagctagg ccagcttcag cagcagctga agcaaaagga gcaggaagcc tcacagctga 5041 agcagcaggt ggagatgcta caggaccata aacgggagct gctggggtca ccctctctgg 5101 gggaaaattg cgttgctggc ttgaaggaga ggctctggaa gttggaatcc agcgcccttg 5161 agcaacagaa aatccagagc cagcaggaaa acaccatcaa gcagctggag cagctccgcc 5221 agcggtttga gctggagatc gagcggatga agcagatgca ccagaaggac cgtgaggacc 5281 aggaggagga actggaggat gtccgtcagt cctgccagaa gcggcttcat cagctggaaa 5341 tgcagctgga gcaagagtat gaagagaagc agatggtcct ccatgagaag caagatttgg 5401 aaggcttgat cggaaccctc tgtgaccaga ttggccatcg ggactttgat gtggagaagc 5461 gacttcggag agacctcagg aggacacatg cactgttgtc agacgtgcag ctccttctgg 5521 gcaccatgga ggatggcaag acatcagtca gcaaggagga gctggagaaa gtgcacagcc 5581 agctggagca gagtgaagcc aagtgtgagg aggccttgaa gacgcagaag gtgctcacag 5641 cggacctgga gagtatgcac agcgagctgg agaacatgac gcggaacaag agcctggtgg 5701 atgagcagct gtacaggctg cagtttgaga aggcggacct cctgaagcgc atcgatgagg 5761 accaggatga cctgaatgag ctgatgcaga agcacaagga cctcattgct cagtctgctg 5821 ctgacattgg gcagatccaa gaactgcagc tgcagctgga ggaagccaag aaggagaagc 5881 acaagctaca agaacaactg caggtggctc agatgcgcat cgagtacctg gaacagtcca 5941 ccgtggatcg agccatcgtc agcaggcagg aggcggtcat ctgtgaccta gagaacaaga 6001 cagagttcca gaaggtgcag attaagagat ttgaggtcct ggtgatccgg cttcgggaca 6061 gcctgatcaa gatgggggag gagctttcac aggcggccac ctccgagtcc cagcagcggg 6121 agagcagcca gtactaccag cggcgcctgg aagagctgaa ggccgacatg gaagagctgg 6181 tgcagcggga ggcagaggcc agccggcggt gcatggagct ggagaagtac gtggaggaac 6241 ttgcagcagt gaggcaaacc ctccagacag acctggagac atccattcgg cggattgccg 6301 acctgcaggc tgccttggaa gaagtggcat ccagtgacag tgatactgag agtgtccaga 6361 cggcagtgga ttgtggcagc agcggccgaa aagagatgga taacgtctcc atcctcagct 6421 cccagccaga gggcagcctg cagtcctggt tgagctgtac tctgtccctg gccacagata 6481 ctatgaggac tccttctcga cagtcagcca ccagcagccg catcctcagc cccaggataa 6541 acgaagaggc tggggacact gagaggaccc agtcggcatt ggcactgagc agagcccggt 6601 ccaccaatgt ccacagcaag acctcaggag acaagcctgt ttctccccac tttgtccgcc 6661 ggcaaaagta ctgtcatttt ggggacggcg aagtgcttgc cgtccagaga aagtccacag 6721 agagattaga acctgcttcc tctcccctgg cttctcggag tacaaataca tccccgctgt 6781 cgagggaaaa gctgcccagt ccttcagcgg ccctctcgga gttcgtggaa gggctccgga 6841 ggaagagagc ccagagaggc caggggtcca cgctgggcct agaggactgg cccactctcc 6901 ccatttacca gacgactggg gcctccacac taaggagggg cagggctggc agtgacgagg 6961 gaaacctctc gctgagggtt ggggcaaagt cacccctgga aatcgaaggg gccgctggtg 7021 gtctcttgag gtccaccagc ctcaaatgca tctcttcaga cggtgttggg ggcacaaccc 7081 tactccccga aaagtcgaaa acccgattca gttcctgcga gtccctctta gaatccagac 7141 cgagcatggg gagaaaactg agctctccga ccacacccag ggacatgctg ttgtcgccca 7201 cactgcgtcc tcggaggcgg tgtctggagt cctctgtgga cgatgcgggc tgtccagacc 7261 ttggaaagga gccgcttgtt ttccagaacc gccagtttgc ccacctgatg gaggaacctc 7321 taggcagtga cccattcagc tggaaactcc caagcctcga ctacgaacgc aagaccaaag 7381 tggacttcga tgacttcctc ccagctatcc ggaagcccca gacacctacc tccttggctg 7441 gatcagccaa aggtgggcaa gacggttcac agcgttcaag catccacttt gaaacggaag 7501 aggctaaccg ttcctttctc tcggggatca agaccatttt gaagaagagc ccggagccca 7561 aggaggatcc cgctcacctg tctgactcgt cctcatcctc cggctccatc gtgtccttca 7621 aaagtgctga cagcatcaaa agtcgaccag gaatcccacg acttgcgggt gacggtggcg 7681 agcgaacgtc ccccgagcgg agagagccag ggacggggag gaaagacgac gatgttgcga 7741 gcataatgaa gaaatacctc cagaagttgc caactttctt gtacaaagtg gttggtaagc 7801 ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt 7861 ggcgcgttaa gtcgacaatc aacctctgga tta