Construct: ORF ccsbBroad304_13226

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015633.1_s304c1, BRDN0000411260
Derived from:
ccsbBroadEn_13226
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RAD9B (144715)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13226
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286533.2 95.2% 94% (many diffs)
2 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286534.2 95.2% 94% (many diffs)
3 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018882.2 95.2% 94% (many diffs)
4 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368054.1 80.8% 79.7% (many diffs)
5 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368055.1 80.8% 79.7% (many diffs)
6 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018879.2 80.8% 79.7% (many diffs)
7 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018880.2 80.8% 79.7% (many diffs)
8 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286531.2 72.2% 71.4% (many diffs)
9 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286532.2 72.2% 71.4% (many diffs)
10 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368051.1 72.2% 71.4% (many diffs)
11 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_024448860.1 72.2% 71.4% (many diffs)
12 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_024448861.1 72.2% 71.4% (many diffs)
13 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_005253849.5 68.8% 62.7% (many diffs)
14 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018877.2 68.4% 67.6% (many diffs)
15 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368056.1 67.8% 66.1% 0_1ins117;533_534ins109;588_639del
16 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_017018881.2 67.8% 66.1% 0_1ins117;533_534ins109;588_639del
17 human 144715 RAD9B RAD9 checkpoint clamp compo... XM_011537972.3 63.7% 62.9% (many diffs)
18 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_152442.4 63.1% 63.1% 1_474del
19 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368053.1 62.6% 61.2% 1_258del;908_909ins109;963_1014del
20 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286535.2 60.1% 59.4% (many diffs)
21 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001286536.2 59.5% 52.8% (many diffs)
22 human 144715 RAD9B RAD9 checkpoint clamp compo... NM_001368052.1 52.5% 51.1% 1_474del;1124_1125ins109;1179_1230del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
879
ORF length:
813
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat tcaaccaaga ttgcttgctg atgccattgt tctttttaca tcaagtcaag
121aggaagttac tcttgctgtt actccactga atttttgcct caagagttct aatgaggaat
181caatggattt gagcaatgct gtacacagtg agatgtttgt tggctcagat gagtttgact
241tctttcaaat tggaatggac actgagataa cattttgttt caaagaattg aagggaatac
301tgacattttc agaagctaca catgctccta tatccattta ttttgatttc cctgggaaac
361ctctggcttt gagtattgat gatatgttag tggaagctaa ctttattttg gccacattag
421ctgatgaaca aagtagagca tcttcaccac agtcactgtg tctttcacag aaacgaaaaa
481ggtcagatct gattgaaaaa aaggctggca aaaatgtaac tggccaggcc ctggaatgta
541tttcaaaaaa agcagcacca agaaggcttt atcctaagga gactctcaca aacatatctg
601cattggaaaa ctgtggcagc cctgcaatga aaagagtgga tggagatgtc agtgaagtat
661cagaaagcag tgtcagcaac acagaggaag tgccagggtc tctgtgtctc agaaagtttt
721cttgcatgtt ctttggagca gtttcttctg accagcaaga acacttcaac caccctttcg
781acagtctggc aagagcaagt gacagtgaag aggacatgaa taatgtgtgc tgcaggaaag
841aatttaatgg aagtgatgcc aaatatttct gtattatctg cccaactttc ttgtacaaag
901tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
961gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)