Construct: ORF ccsbBroad304_13371

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009836.1_s304c1, BRDN0000409684
Derived from:
ccsbBroadEn_13371
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EEF1DP3 (196549)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13371
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1936 EEF1D eukaryotic translation elon... NM_001130055.3 42.9% 30.3% (many diffs)
2 human 1936 EEF1D eukaryotic translation elon... NM_001130057.3 42.9% 30.3% (many diffs)
3 human 1936 EEF1D eukaryotic translation elon... NM_001289950.3 42.9% 30.3% (many diffs)
4 human 1936 EEF1D eukaryotic translation elon... NM_001960.6 42.9% 30.3% (many diffs)
5 human 1936 EEF1D eukaryotic translation elon... XM_006716525.1 42.9% 30.3% (many diffs)
6 human 1936 EEF1D eukaryotic translation elon... NM_001195203.3 42.3% 29.6% (many diffs)
7 human 1936 EEF1D eukaryotic translation elon... NM_001130056.4 36% 23.8% (many diffs)
8 human 1936 EEF1D eukaryotic translation elon... NM_001317743.3 36% 23.8% (many diffs)
9 human 1936 EEF1D eukaryotic translation elon... NM_001330646.2 36% 23.8% (many diffs)
10 human 1936 EEF1D eukaryotic translation elon... XM_006716519.4 18.6% 13.3% (many diffs)
11 human 1936 EEF1D eukaryotic translation elon... XM_017013171.1 18.6% 13.3% (many diffs)
12 human 1936 EEF1D eukaryotic translation elon... XM_024447088.1 18.6% 13.3% (many diffs)
13 human 1936 EEF1D eukaryotic translation elon... NM_001130053.4 18.6% 13.3% (many diffs)
14 human 1936 EEF1D eukaryotic translation elon... NM_032378.6 18.6% 13.3% (many diffs)
15 human 1936 EEF1D eukaryotic translation elon... XM_005250820.4 18.6% 13.3% (many diffs)
16 human 1936 EEF1D eukaryotic translation elon... XM_005250823.1 18.6% 13.3% (many diffs)
17 human 1936 EEF1D eukaryotic translation elon... XM_006716522.1 18.6% 13.3% (many diffs)
18 human 1936 EEF1D eukaryotic translation elon... XM_006716523.2 18.6% 13.3% (many diffs)
19 human 1936 EEF1D eukaryotic translation elon... XM_006716524.1 18.6% 13.3% (many diffs)
20 human 1936 EEF1D eukaryotic translation elon... XM_011516905.2 18.6% 13.3% (many diffs)
21 human 1936 EEF1D eukaryotic translation elon... XM_011516906.3 18.6% 13.3% (many diffs)
22 human 1936 EEF1D eukaryotic translation elon... XM_017013170.2 18.6% 13.3% (many diffs)
23 human 1936 EEF1D eukaryotic translation elon... XM_006716520.4 15.6% 10.4% (many diffs)
24 human 1936 EEF1D eukaryotic translation elon... XM_017013172.1 15.6% 10.4% (many diffs)
25 human 1936 EEF1D eukaryotic translation elon... XM_024447089.1 15.6% 10.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
465
ORF length:
399
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tacaaacttt ctagtaggtg agaagatctg gttccacaag ttcaaatatg
121gcgatgcaga aaggagattc tacgaacaga tgaacgggcc tgtggccggc gcctccctcc
181aggaggccag catgatcctc catgatattg ccagagccag agagaacatc ccgaaatccc
241tggccggaag cttaggccca ggggcgtcta gcggccccag cggagaccac agcgagctcg
301tcgtccggat cgccagtctg gaagtggaca accagagaga cctggctgaa cgtgctggag
361aagagcttgc ccggccactg ggccacagcc ccgcagaccc agcacatgtc tcccatgcgc
421caagtggagc ccccggccaa gaagctagcc acaccagcag aggatgccca actttcttgt
481acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
541gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)