Construct: ORF ccsbBroad304_13379
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010658.1_s304c1, BRDN0000410513
- Derived from:
- ccsbBroadEn_13379
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF585A (199704)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13379
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 199704 | ZNF585A | zinc finger protein 585A | NM_001288800.2 | 14% | 12.7% | (many diffs) |
| 2 | human | 92285 | ZNF585B | zinc finger protein 585B | NM_152279.4 | 13.5% | 12.2% | (many diffs) |
| 3 | human | 199704 | ZNF585A | zinc finger protein 585A | NM_152655.3 | 6.8% | 5.5% | (many diffs) |
| 4 | human | 199704 | ZNF585A | zinc finger protein 585A | NM_199126.3 | 6.8% | 5.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 405
- ORF length:
- 339
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc agctaattgg acctcacctc agaaatcctc agccctggct ccagaggatc 121 atggcagctc ctatgaggga tcagtgtcct tcagggatgt ggctatcgat ttcagcagag 181 aggaatggcg gcacctggac ccttctcaga gaaacctgta ccgggatgtg atgctggaga 241 cctacagcca cctgctctca ataggatatc aagttcctga agcagaggtg gtcatgttgg 301 agcaaggaaa ggaaccatgg gcactgcagg gtgagaggcc acgtcagagc tgcccagcac 361 cgtgtcttgt gaactcccat caccttcaag aaagcttccg agggtgccca actttcttgt 421 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 481 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a