Transcript: Human NM_152655.3

Homo sapiens zinc finger protein 585A (ZNF585A), transcript variant 1, mRNA.

Source:
NCBI, updated 2018-09-23
Taxon:
Homo sapiens (human)
Gene:
ZNF585A (199704)
Length:
6822
CDS:
527..2671

Additional Resources:

NCBI RefSeq record:
NM_152655.3
NBCI Gene record:
ZNF585A (199704)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_152655.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431051 TGCCAACAAATTGAATGATAA pLKO_005 3029 3UTR 100% 13.200 9.240 N ZNF585A n/a
2 TRCN0000107617 CATCCAGAAGACCCATTTGAT pLKO.1 1198 CDS 100% 5.625 3.938 N ZNF585A n/a
3 TRCN0000107619 CTCGTTACACATAAGAAAGTT pLKO.1 1382 CDS 100% 5.625 3.938 N ZNF585A n/a
4 TRCN0000107615 GCAGTATCTAACTGTCCCTAA pLKO.1 3984 3UTR 100% 4.050 2.835 N ZNF585A n/a
5 TRCN0000107616 GCCAGAATTTATTATACACCA pLKO.1 871 CDS 100% 2.640 1.848 N ZNF585A n/a
6 TRCN0000107618 GAAAGCTTATGAATGCGCCAA pLKO.1 742 CDS 100% 2.160 1.512 N ZNF585A n/a
7 TRCN0000421585 GTCGCAACTCCATGTTCATAA pLKO_005 1711 CDS 100% 13.200 7.920 N ZNF585A n/a
8 TRCN0000017662 GCCTTCAACCAGAAATCAATA pLKO.1 2033 CDS 100% 13.200 6.600 Y ZNF585B n/a
9 TRCN0000017659 GCCCTATATATGTACCGAATA pLKO.1 1333 CDS 100% 10.800 5.400 Y ZNF585B n/a
10 TRCN0000413960 CACACTGGAGAGAAGCCTTAC pLKO_005 2495 CDS 100% 6.000 3.000 Y Zfp612 n/a
11 TRCN0000016730 CTGGAGAGAAACCTTATGAAT pLKO.1 1491 CDS 100% 5.625 2.813 Y ZNF345 n/a
12 TRCN0000015520 CTGGAGAGAAGCCTTATGAAT pLKO.1 2163 CDS 100% 5.625 2.813 Y ZNF625 n/a
13 TRCN0000017658 CGGTCAAATCTCATTACACAT pLKO.1 1793 CDS 100% 4.950 2.475 Y ZNF585B n/a
14 TRCN0000017661 GAGAAATTATGGGACCATAAT pLKO.1 656 CDS 100% 1.320 0.660 Y ZNF585B n/a
15 TRCN0000016211 GCGAATTCACACTGGAGAGAA pLKO.1 2488 CDS 100% 0.000 0.000 Y ZNF2 n/a
16 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 2076 CDS 100% 10.800 5.400 Y Gm14308 n/a
17 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 2077 CDS 100% 13.200 6.600 Y Gm14305 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_152655.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13379 pDONR223 100% 6.8% 5.5% None (many diffs) n/a
2 ccsbBroad304_13379 pLX_304 0% 6.8% 5.5% V5 (many diffs) n/a
3 TRCN0000468583 GGGCTTCTATGTTGCTCACTGTGT pLX_317 88.3% 6.8% 5.5% V5 (many diffs) n/a
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