Construct: ORF ccsbBroad304_13410

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003518.1_s304c1, BRDN0000403489
Derived from:
ccsbBroadEn_13410
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC83 (220047)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13410
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 220047 CCDC83 coiled-coil domain containi... NM_001286159.1 99.9% 99.7% 680T>C
2 human 220047 CCDC83 coiled-coil domain containi... XM_017017354.1 99.6% 99.5% 680T>C;872_873insAGA
3 human 220047 CCDC83 coiled-coil domain containi... NM_173556.4 92.9% 92.7% 680T>C;794_886del
4 human 220047 CCDC83 coiled-coil domain containi... XM_011544839.2 92.9% 92.7% 680T>C;794_886del
5 human 220047 CCDC83 coiled-coil domain containi... XM_011544840.2 92.9% 92.7% 680T>C;794_886del
6 human 220047 CCDC83 coiled-coil domain containi... XM_011544841.1 92.9% 92.7% 680T>C;794_886del
7 human 220047 CCDC83 coiled-coil domain containi... XM_011544842.1 92.7% 92.5% 680T>C;794_886del;965_966insAGA
8 human 220047 CCDC83 coiled-coil domain containi... XM_017017355.1 86.1% 85.9% 341_342ins168;512T>C;704_705insAGA
9 human 220047 CCDC83 coiled-coil domain containi... XM_011544843.1 80.3% 80.1% 341_342ins168;512T>C;626_718del
10 human 220047 CCDC83 coiled-coil domain containi... XM_011544844.2 70.8% 70.7% 0_1ins294;386T>C;500_592del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1305
ORF length:
1239
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga aaactcaggg aaagcaaata aaaaggatac acatgacggg ccaccaaaag
121aaattaaact gcctaccagt gaagcacttc tagactatca atgtcaaata aaggaagatg
181ccgtggagca attcatgttt caaataaaga cacttaggaa aaagaaccaa aaatatcatg
241aaagaaatag ccgcttaaaa gaagaacaga tttggcacat acggcatcta ctaaaggaac
301tgagtgaaga gaaggcagag ggattgccag ttgtaacaag agaggatgtt gaagaagcga
361tgaaggaaaa atggaagttt gaaagagacc aggaaaaaaa cttgagagat atgcgcatgc
421aaataagtaa tgctgagaaa ctatttcttg agaaactcag tgaaaaggaa tattgggagg
481agtacaagaa tgtagggagt gaacgacatg ctaaactcat tacctcctta caaaatgaca
541tcaacacagt taaagagaat gcagagaaaa tgtcagaaca ctataaaatc actctggaag
601atactagaaa gaaaataatc aaggaaactt tgttgcaact ggaccaaaag aaggaatggg
661ccacacagaa tgctgtaaag ctcattgaca agggcagtta tctagagatc tgggagaatg
721actggctcaa aaaagaggtt gcaactcaca ggaaggaagt tgaagaatta aaaaatgcta
781ttcatgaact ggaagcagaa aatttggtgc ttattgatca actatccaac tgtagacttg
841tggatctcaa gatacccagg cgactatatc ttacccaagc tgctggacta gaagtgccac
901ctgaagaaat gtctttggaa ttgccagaaa cacatataga agagaagtca gaattgcaac
961ccacagaagt agaaagtaga gacttgatgt cctcatcaga tgagagcact atcttacatc
1021ttagtcatga aaatagcatc gaagatctcc agtatgtgaa gatagataaa gaggaaaact
1081caggcacaga gtttggggac actgatatga agtacttact atatgaggat gagaaggatt
1141tcaaggatta tgtaaacttg ggccccctgg gagtgaagct tatgagtgtg gagagcaaga
1201aaatgcccat tcattttcaa gagaaggaaa ttccagtcaa actctataaa gatgtcagga
1261gcccagaaag ccacatcaca tataagatga tgaagtcttt tctctaccca actttcttgt
1321acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1381gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)