Construct: ORF ccsbBroad304_13538

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002646.1_s304c1, BRDN0000402521
Derived from:
ccsbBroadEn_13538
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPL23AP82 (284942)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13538
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_024531.1 23.8% (many diffs)
2 human 118433 RPL23AP7 ribosomal protein L23a pseu... NR_024530.1 23.7% (many diffs)
3 human 101929828 LOC101929828 uncharacterized LOC101929828 XR_430735.3 14.4% (many diffs)
4 human 101929828 LOC101929828 uncharacterized LOC101929828 XR_942193.2 14.4% (many diffs)
5 human 101929828 LOC101929828 uncharacterized LOC101929828 XR_254459.3 14.4% (many diffs)
6 human 101929828 LOC101929828 uncharacterized LOC101929828 XR_942194.2 14.4% (many diffs)
7 human 101929828 LOC101929828 uncharacterized LOC101929828 XR_254460.3 14.4% (many diffs)
8 human 101929828 LOC101929828 uncharacterized LOC101929828 XR_942195.2 14.4% (many diffs)
9 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_001745752.2 11.8% (many diffs)
10 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_001745753.2 11.3% (many diffs)
11 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_001745755.2 11% (many diffs)
12 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_001745754.2 10.9% (many diffs)
13 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_001745751.2 10.5% (many diffs)
14 human 284593 FAM41C family with sequence simila... NR_027055.1 9.5% (many diffs)
15 human 107987272 LOC107987272 uncharacterized LOC107987272 XR_001754025.1 8.7% (many diffs)
16 human 107985295 LOC107985295 uncharacterized LOC107985295 XR_001753827.1 7.8% (many diffs)
17 human 107985295 LOC107985295 uncharacterized LOC107985295 XR_001753826.1 7.8% (many diffs)
18 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_001745756.2 7.7% (many diffs)
19 human 101930129 LOC101930129 uncharacterized LOC101930129 XR_001748086.2 7.1% (many diffs)
20 human 101930129 LOC101930129 uncharacterized LOC101930129 XR_001748087.2 7.1% (many diffs)
21 human 102723872 LOC102723872 uncharacterized LOC102723872 XR_002956529.1 7% (many diffs)
22 human 102723872 LOC102723872 uncharacterized LOC102723872 XR_002956530.1 7% (many diffs)
23 human 102723872 LOC102723872 uncharacterized LOC102723872 XR_002956531.1 7% (many diffs)
24 human 101927506 LOC101927506 uncharacterized LOC101927506 XR_941341.3 6.6% (many diffs)
25 human 102723872 LOC102723872 uncharacterized LOC102723872 XR_002958929.1 6.3% (many diffs)
26 human 102723872 LOC102723872 uncharacterized LOC102723872 XR_002958930.1 6.3% (many diffs)
27 human 102723872 LOC102723872 uncharacterized LOC102723872 XR_002958931.1 6.3% (many diffs)
28 human 105371423 LINC02193 long intergenic non-protein... XR_001752318.2 4.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
255
ORF length:
189
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct ggtggcctgg acagtgaagg gagagaagtg gatttgggag acatttagga
121ggaacagtaa gaggaccttg tgcatgaata atttgtttcc acactacaga aagaatccca
181gacttcttag agaacccagt gactttttgc accttaaatc tgtgaaatcc tcatgttttc
241ttctgccgta tccataccca actttcttgt acaaagtggt tggtaagcct atccctaacc
301ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
361cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)