Construct: ORF ccsbBroad304_13725
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007010.1_s304c1, BRDN0000460173
- Derived from:
- ccsbBroadEn_13725
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNRPD2P2 (645339)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13725
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6633 | SNRPD2 | small nuclear ribonucleopro... | NM_001369751.1 | 38.4% | 30.7% | (many diffs) |
| 2 | human | 6633 | SNRPD2 | small nuclear ribonucleopro... | NM_177542.3 | 38.4% | 30.7% | (many diffs) |
| 3 | human | 6633 | SNRPD2 | small nuclear ribonucleopro... | NM_004597.6 | 35.3% | 28.3% | (many diffs) |
| 4 | human | 645339 | SNRPD2P2 | small nuclear ribonucleopro... | NR_033826.1 | 21.2% | 1_410del;576_776del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 234
- ORF length:
- 165
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggtgctggag aatgtgaagg agatgtgtac tgaggtcccc aaggggggca 121 acggtggcaa gggcaagaag aagtccaagc cagccaacaa agaccacttc atctccaagc 181 tcttcctgtg cagggactca gtcatcacca acaagtgggg gccacctccc catttgccaa 241 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 301 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta