Construct: ORF ccsbBroad304_13772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018255.1_s304c1, BRDN0000407262
- Derived from:
- ccsbBroadEn_13772
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13772
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101927905 | LINC02449 | long intergenic non-protein... | NR_120455.1 | 14.3% | (many diffs) | |
| 2 | human | 101927905 | LINC02449 | long intergenic non-protein... | NR_120454.1 | 12% | (many diffs) | |
| 3 | human | 285407 | ALG1L9P | ALG1 like 9, pseudogene | NR_073386.1 | 7% | (many diffs) | |
| 4 | human | 619423 | FAM85A | family with sequence simila... | NR_146925.1 | 6.2% | (many diffs) | |
| 5 | human | 112268389 | LOC112268389 | uncharacterized LOC112268389 | XR_002959144.1 | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 186
- ORF length:
- 120
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc gtgggagatg atggctgtgc tctcggagag tgtgactgag cctcccgagg 121 gctgcaccaa gagagggcga gagagtcagt ccagcaatca gaaggcaagt ggcttagaag 181 acaagtaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg 241 gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca 301 acctctggat ta