Construct: ORF ccsbBroad304_14078

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004885.1_s304c1, BRDN0000407419
Derived from:
ccsbBroadEn_14078
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
JADE2 (23338)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14078
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23338 JADE2 jade family PHD finger 2 NM_015288.6 31% 30.8% 1_1632del;2221G>A;2369C>T
2 human 23338 JADE2 jade family PHD finger 2 NM_001289984.2 31% 30.8% 1_1635del;2224G>A;2372C>T
3 human 23338 JADE2 jade family PHD finger 2 XM_024446007.1 29.6% 29.4% 1_1746del;2335G>A;2483C>T
4 human 23338 JADE2 jade family PHD finger 2 XM_017009282.1 29.4% 29.2% 1_1761del;2350G>A;2498C>T
5 human 23338 JADE2 jade family PHD finger 2 NM_001308143.2 29.4% 29.2% 1_1764del;2353G>A;2501C>T
6 human 23338 JADE2 jade family PHD finger 2 XM_005271945.2 29.4% 29.2% 1_1764del;2353G>A;2501C>T
7 human 23338 JADE2 jade family PHD finger 2 XM_005271946.2 29.4% 29.2% 1_1764del;2353G>A;2501C>T
8 human 23338 JADE2 jade family PHD finger 2 XM_005271948.4 29.4% 29.2% 1_1764del;2353G>A;2501C>T
9 human 23338 JADE2 jade family PHD finger 2 XM_011543291.3 29.4% 29.2% 1_1764del;2353G>A;2501C>T
10 human 23338 JADE2 jade family PHD finger 2 NM_001289985.2 28.8% 28.7% 1_1812del;2401G>A;2549C>T
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
804
ORF length:
738
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc catgagcgag tggccactga acaatgggca ccgcgaggac cctgctccag
121ggctgctgtc agaggaactg ctgcaggacg aggagacact gctcagcttc atgcgggacc
181cctcgctgcg acctggtgac cctgctagga aggcccgagg ccgcacccgc ctgcctgcca
241agaagaaacc accaccacca ccaccgcagg acgggcctgg ttcacggacg actccagaca
301aagcccccaa gaagacctgg ggccaggatg caggcagtgg caaggggggt caagggccac
361ctaccaggaa gccaccacgt cggacatctt ctcacttgcc gtccagccct gcagccgggg
421actgtcccat cctagccacc cctgaaagcc ccccgccact ggcccctgag accccggacg
481aggcagcctc agtagctgct gactcagatg tccaagtgcc tggccctgca gcaagcccta
541agcctttggg ccggctccgg ccaccccgcg agagcaaggt aacccggaga ttgccgggtg
601ccaggcctga tgctgggatg ggaccacctt cagctgtggc tgagaggccc aagatcagcc
661tgcattttga cactgagact gatggctact tctctgatgg ggagatgagc gactcagatg
721tagaggccga ggacggtggg gtgcagcggg gtccccggga ggcaggggca gaggaggtgg
781tccgcatggg cgtactggcc ttctacccaa ctttcttgta caaagtggtt ggtaagccta
841tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
901gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)