Construct: ORF ccsbBroad304_14248

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014490.1_s304c1, BRDN0000411521
Derived from:
ccsbBroadEn_14248
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC23 (64927)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14248
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64927 TTC23 tetratricopeptide repeat do... NM_001288615.3 85.9% 84.9% (many diffs)
2 human 64927 TTC23 tetratricopeptide repeat do... NM_001288616.3 85.9% 84.9% (many diffs)
3 human 64927 TTC23 tetratricopeptide repeat do... NM_001353869.2 85.9% 84.9% (many diffs)
4 human 64927 TTC23 tetratricopeptide repeat do... XM_017022512.1 85.9% 84.9% (many diffs)
5 human 64927 TTC23 tetratricopeptide repeat do... XM_017022513.2 85.9% 84.9% (many diffs)
6 human 64927 TTC23 tetratricopeptide repeat do... XM_017022514.1 85.9% 84.9% (many diffs)
7 human 64927 TTC23 tetratricopeptide repeat do... XM_017022515.1 85.9% 84.9% (many diffs)
8 human 64927 TTC23 tetratricopeptide repeat do... XM_017022516.2 85.9% 84.9% (many diffs)
9 human 64927 TTC23 tetratricopeptide repeat do... XM_017022518.1 85.9% 84.9% (many diffs)
10 human 64927 TTC23 tetratricopeptide repeat do... XM_024450029.1 85.9% 84.9% (many diffs)
11 human 64927 TTC23 tetratricopeptide repeat do... XM_011521944.2 85.2% 82.8% (many diffs)
12 human 64927 TTC23 tetratricopeptide repeat do... XM_011521943.2 84.5% 82.1% (many diffs)
13 human 64927 TTC23 tetratricopeptide repeat do... XM_011521941.2 79.1% 77.6% (many diffs)
14 human 64927 TTC23 tetratricopeptide repeat do... XM_011521940.2 78.6% 75.9% (many diffs)
15 human 64927 TTC23 tetratricopeptide repeat do... XM_011521929.1 74.4% 71.9% (many diffs)
16 human 64927 TTC23 tetratricopeptide repeat do... XM_011521930.1 74.4% 71.9% (many diffs)
17 human 64927 TTC23 tetratricopeptide repeat do... XM_011521931.1 74.4% 71.9% (many diffs)
18 human 64927 TTC23 tetratricopeptide repeat do... XM_011521932.2 74.4% 71.9% (many diffs)
19 human 64927 TTC23 tetratricopeptide repeat do... XM_011521933.1 74.4% 71.9% (many diffs)
20 human 64927 TTC23 tetratricopeptide repeat do... XM_011521934.2 74.4% 71.9% (many diffs)
21 human 64927 TTC23 tetratricopeptide repeat do... XM_011521935.1 74.4% 71.9% (many diffs)
22 human 64927 TTC23 tetratricopeptide repeat do... XM_011521936.1 74.4% 71.9% (many diffs)
23 human 64927 TTC23 tetratricopeptide repeat do... XM_011521937.1 74.4% 71.9% (many diffs)
24 human 64927 TTC23 tetratricopeptide repeat do... XM_011521939.1 74.4% 71.9% (many diffs)
25 human 64927 TTC23 tetratricopeptide repeat do... XM_017022509.2 74.4% 71.9% (many diffs)
26 human 64927 TTC23 tetratricopeptide repeat do... XM_017022510.1 74.4% 71.9% (many diffs)
27 human 64927 TTC23 tetratricopeptide repeat do... XM_017022511.2 74.4% 71.9% (many diffs)
28 human 64927 TTC23 tetratricopeptide repeat do... XM_024450027.1 74.4% 71.9% (many diffs)
29 human 64927 TTC23 tetratricopeptide repeat do... XM_024450028.1 74.4% 71.9% (many diffs)
30 human 64927 TTC23 tetratricopeptide repeat do... XM_011521927.2 74.2% 72.2% (many diffs)
31 human 64927 TTC23 tetratricopeptide repeat do... XR_931893.2 59.5% (many diffs)
32 human 64927 TTC23 tetratricopeptide repeat do... XR_931890.2 56% (many diffs)
33 human 64927 TTC23 tetratricopeptide repeat do... XR_931895.2 37.5% (many diffs)
34 human 64927 TTC23 tetratricopeptide repeat do... XR_002957671.1 35.4% (many diffs)
35 human 64927 TTC23 tetratricopeptide repeat do... XR_931888.2 35.2% (many diffs)
36 human 64927 TTC23 tetratricopeptide repeat do... NR_109947.3 32.6% (many diffs)
37 human 64927 TTC23 tetratricopeptide repeat do... XR_002957673.1 31.5% (many diffs)
38 human 64927 TTC23 tetratricopeptide repeat do... XR_002957670.1 30.4% (many diffs)
39 human 64927 TTC23 tetratricopeptide repeat do... XR_001751378.1 30.2% (many diffs)
40 human 64927 TTC23 tetratricopeptide repeat do... XR_002957672.1 30.2% (many diffs)
41 human 64927 TTC23 tetratricopeptide repeat do... XR_001751379.2 26% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1245
ORF length:
1179
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca anaatcacag gaaacccaca tatccaacca cctagatgaa gttgttgctg
121ctgttagcat cactcataga aagaagttcc aaaacaagct gcttcagaca gcactattcc
181agcctcctcg agagaaactc cacctctgtg aagagaaagc aaagtcctat tccaacagtc
241atgagtacaa acaggccgtc catgagcttg tgcgttgcgt agcactgaca agaatttgct
301atggagactc acattggaaa ctagcagagg cacatgttaa tctggctcaa ggctacctcc
361agctgaaagg actgtcactg caagcaaaac aacatgcaga aaaagccaga caaatcctcg
421ccaactccat tgtgcctccc tatagtgaga atacagatgt tttcaagttt tccattgagc
481ttttccatac catgggcaga gctttactct cccttcaaaa atttaaggaa gctgcagaga
541atttgacaaa agcagagaga ctttcaaagg agctgctaca atgtggaaga attataaagg
601aagaatggat agaaattgaa gcacggatca gattatcatt tgcacaggtg tatcaaggtc
661agaagaagtc aaaagaagct ttgtcccact atcaagcagc tttggaatat gttgagatca
721gtaaaggtga aacaagtcgt gagtgtgtac ccatattgag agaattagca ggtgtagagc
781aagccctggg actccacgat gtatccatca accacttcct ccaggcacat ctcatcatcc
841tgagtagaag cccctctcaa gtggaggcag cagactcggc acacatcgtc gcccatgctg
901ctgtcgcttc agggagacac gagcaccatg atgtagctga gcagtatttt caagagagca
961tggctcatct taaggattct gaagggatgg gaagaaccaa atttctttca attcaagatg
1021aattttgcca ttttctacaa atgactggac aaaaagagag agcaacctcg atcctgagag
1081agtccctgga agccaaagtg gaagcatttg gcgatttcag tcccgaggtg gcagagacat
1141accggctcct gggaggagca gacctggcgc aggggaacca cagtggggcc cgcaagaaac
1201tgaagaaggg agaccttagt ttcctgctct cagcgacact tccataccca actttcttgt
1261acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1321gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)