Construct: ORF ccsbBroad304_14346

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016668.1_s304c1, BRDN0000406549
Derived from:
ccsbBroadEn_14346
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D31 (93594)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14346
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363156.1 60% 60% 1_483del;822T>C;1136_1330del
2 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363155.1 37.9% 37.9% 1_1668del;2007T>C
3 human 93594 TBC1D31 TBC1 domain family member 31 NM_001330606.2 35.3% 35.3% 1_1668del;2007T>C;2321_2515del
4 human 93594 TBC1D31 TBC1 domain family member 31 XM_017013984.1 35.3% 35.3% 1_1668del;2007T>C;2321_2515del
5 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363153.1 34.6% 33% (many diffs)
6 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363154.1 34.4% 34.4% 1_1668del;2007T>C;2088_2089ins93
7 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363148.1 33.9% 33.9% 1_1983del;2322T>C
8 human 93594 TBC1D31 TBC1 domain family member 31 XM_005251104.1 32.4% 30.8% (many diffs)
9 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363149.1 32.1% 32.1% 1_1953del;2292T>C;2606_2800del
10 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363152.1 32.1% 32.1% (many diffs)
11 human 93594 TBC1D31 TBC1 domain family member 31 NM_145647.4 31.8% 31.8% 1_1983del;2322T>C;2636_2830del
12 human 93594 TBC1D31 TBC1 domain family member 31 NM_001145088.2 30.8% 30.8% 1_1983del;2322T>C;2403_2404ins93
13 human 93594 TBC1D31 TBC1 domain family member 31 XR_002956653.1 30.7% (many diffs)
14 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363151.2 29.3% 27.3% (many diffs)
15 human 93594 TBC1D31 TBC1 domain family member 31 XR_928364.1 28.9% (many diffs)
16 human 93594 TBC1D31 TBC1 domain family member 31 NM_001363150.1 28.9% 28.9% (many diffs)
17 human 93594 TBC1D31 TBC1 domain family member 31 XM_011517379.2 27.6% 25.6% (many diffs)
18 human 93594 TBC1D31 TBC1 domain family member 31 XR_001745625.1 27.2% (many diffs)
19 human 93594 TBC1D31 TBC1 domain family member 31 XR_001745622.1 26.3% (many diffs)
20 human 93594 TBC1D31 TBC1 domain family member 31 XR_928365.2 26.1% (many diffs)
21 human 93594 TBC1D31 TBC1 domain family member 31 XR_001745623.1 19.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1086
ORF length:
1020
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct taatgttttt gttgcactga caaaagggca gtatccagta tttaatcaat
121atccaaagtt tattgtggac tatcaaacac aggaacgaga aagaataagg aatgatgaat
181tggattactt aagagagagg cagacagttg aagatatgca agctaaagtc gaccagcaaa
241gagttgaaga tgaagcttgg taccagaaac aggagctgct tcgtaaagct gaagaaacaa
301gaagagaaat gctcttacaa gaggaggaga aaatgataca acaaagacag aggctagctg
361ctgtgaaaag agagctgaaa gtaaaggaaa tgcacttaca agacgctgca agaaggcgtt
421ttctgaagct tcagcaagat caacaggaaa tggaactaag aagactggat gatgaaattg
481ggagaaaggt atatatgaga gatcgagaaa ttgctgccac agccagagac ctagaaatga
541gacagctgga actcgaatca caaaagagac tttatgagaa gaatcttact gaaaatcaag
601aagctcttgc aaaagaaatg cgagcagatg cagatgccta tagacgaaaa gtggatcttg
661aagaacacat gtttcataag ctgatagaag caggtgaaac ccagagccag aaaactcaga
721agtggaagga agctgaagga aaagagttcc gtttgagatc agcaaagaaa gcttctgctc
781tttcagatgc gtctagaaag tggtttttaa agcaagagat aaatgcggct gtagaacatg
841ctgaaaatcc atgtcataaa gaagaaccca ggttccaaaa tgaacaggac tcaagctgtt
901tgcctagaac ctcacaatta aatgactctt ctgaaatgga tccctcaaca cagatttctt
961taaatagaag agcagtagaa tgggacacca cgggacagaa tcttattaag aaagtgagaa
1021atcttcgcca gagactcact gcccgggctc gtcacagatg tcaaacccct catcttttgg
1081ctgcataccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1141gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1201acctctggat ta

Download FASTA (ORF) (Full)

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