Construct: ORF ccsbBroad304_14380

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004900.1_s304c1, BRDN0000399530
Derived from:
ccsbBroadEn_14380
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TAMM41 (132001)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14380
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 132001 TAMM41 TAM41 mitochondrial translo... NM_138807.4 99.8% 3% 9_10insN
2 human 132001 TAMM41 TAM41 mitochondrial translo... NM_001284401.2 93.6% 4.1% 9_10insN;874_936del
3 human 132001 TAMM41 TAM41 mitochondrial translo... XM_017005725.2 93.2% 2% (many diffs)
4 human 132001 TAMM41 TAM41 mitochondrial translo... NM_001321294.2 81.1% 4.6% (many diffs)
5 human 132001 TAMM41 TAM41 mitochondrial translo... XM_017005726.2 81% 2.2% (many diffs)
6 human 132001 TAMM41 TAM41 mitochondrial translo... NM_001366031.2 74.7% 2.5% (many diffs)
7 human 132001 TAMM41 TAM41 mitochondrial translo... XM_005264873.4 67.6% 1.4% (many diffs)
8 human 132001 TAMM41 TAM41 mitochondrial translo... NR_158710.1 64.2% (many diffs)
9 human 132001 TAMM41 TAM41 mitochondrial translo... XR_001740021.2 62.3% (many diffs)
10 human 132001 TAMM41 TAM41 mitochondrial translo... NR_135611.2 60.1% (many diffs)
11 human 132001 TAMM41 TAM41 mitochondrial translo... XM_005264875.4 59.4% 8.2% (many diffs)
12 human 132001 TAMM41 TAM41 mitochondrial translo... XM_017005727.1 54.4% 6.7% (many diffs)
13 human 132001 TAMM41 TAM41 mitochondrial translo... NR_135609.2 45.4% (many diffs)
14 human 132001 TAMM41 TAM41 mitochondrial translo... NM_001321295.2 44.4% 8% 0_1ins499;376_438del
15 human 132001 TAMM41 TAM41 mitochondrial translo... NR_158713.2 41.1% (many diffs)
16 human 132001 TAMM41 TAM41 mitochondrial translo... NR_158712.1 36.8% (many diffs)
17 human 132001 TAMM41 TAM41 mitochondrial translo... NR_104314.2 35.6% (many diffs)
18 human 132001 TAMM41 TAM41 mitochondrial translo... NR_158711.1 31% (many diffs)
19 human 132001 TAMM41 TAM41 mitochondrial translo... NR_158714.1 29.5% (many diffs)
20 human 132001 TAMM41 TAM41 mitochondrial translo... XR_001740020.2 29% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
234
ORF length:
168
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggaatggc gctgncagac gctgcagagc tcgtgggtga ccttccgcaa gatcctgtct
121cacttccccg aggagctgag tctggctttc gtctacggct ccggggtgta ccgccaggca
181gggccgagtt cagaccagaa gaatgctatg ctggactttg tgttcacagt agatgaccct
241gtcgcatggc attcaaagaa cctgaagaaa aattggagtc actactcttt cctaaaagtt
301ttagggccca agattatcac gtccatccag aataactatg gcgctggagt ttactacaat
361tcattgatca tgtgtaatgg taggcttatc aaatatggag ttattagcac taacgttctg
421attgaagatc tcctcaactg gaataactta tacattgctg gacgactcca aaaaccggtg
481aaaattatct cagtgaacga ggatgtcact cttagatcag ccctcgatag aaatctgaag
541agtgctgtga ccgctgcttt cctcatgctc cccgaaagct tttctgaaga agacctcttc
601atagagattg ccggtctctc ctattcaggt gactttcgga tggtggttgg agaagataaa
661acaaaagtgt tgaatattgt gaagcccaat atagcccact ttcgagagct ctatggcagc
721atactacagg aaaatcctca agtggtgtat aaaagccagc aaggctggct ggagatagat
781aaaagcccag aaggacagtt cactcagctg atgacattgc ccaaaacctt acagcaacag
841ataaatcata ttatggaccc tcctggaaaa aacagagatg tggaagaaac tttattccaa
901gtggctcatg atcccgactg tggagatgtg gtgcgactag gcctgaagaa gtcagtgatt
961tatagttcac taaaactgca caaaatgtgg aaagggtggc tgaggaaaac atcctgccca
1021actttcttgt acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct
1081acgtagtaat gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt
1141a

Download FASTA (ORF) (Full)

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