Construct: ORF ccsbBroad304_14463
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006771.1_s304c1, BRDN0000460234
- Derived from:
- ccsbBroadEn_14463
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LINC01270 (284751)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14463
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284751 | LINC01270 | long intergenic non-protein... | NR_034124.1 | 13.8% | 1_29del;57_58insG;345_2278del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 165
- ORF length:
- 96
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gacacagcac ttttgggcac aaggcagggg cccagagggg tgcgtggggg 121 ccgcagccca gcccccaagc cccgccagcg gctttactgg ggtgtaacaa acacacgata 181 aactgcgcat attccagtgt tcatgtggat gagtttggac atatgcacac acttccgaaa 241 ccaccagcac aatcaagaca gcagacatat ccatcgcccc caagggtgtc cttgtgtctt 301 tttgtcattc atccctcccg gccgccccat ccacactccc atcgcctgcc gactgtggct 361 gatctgcttt ctgcggctgt ggatttgcca actttcttgt acaaagtggt tggtaagcct 421 atccctaacc ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg 481 cgcgttaagt cgacaatcaa cctctggatt a