Construct: ORF ccsbBroad304_14467

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002390.1_s304c1, BRDN0000460823
Derived from:
ccsbBroadEn_14467
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PPIL6 (285755)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14467
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285755 PPIL6 peptidylprolyl isomerase li... NM_173672.5 99.8% 1.6% 5_6insA
2 human 285755 PPIL6 peptidylprolyl isomerase li... NM_001111298.2 92.1% 1.4% 5_6insA;687_764del
3 human 285755 PPIL6 peptidylprolyl isomerase li... NM_001286360.1 89.6% 1.4% 5_6insA;134_135ins96
4 human 285755 PPIL6 peptidylprolyl isomerase li... XM_011535765.3 82.7% 1.3% 5_6insA;134_135ins96;591_668del
5 human 285755 PPIL6 peptidylprolyl isomerase li... XM_011535767.3 82.2% 1.7% (many diffs)
6 human 285755 PPIL6 peptidylprolyl isomerase li... XM_011535766.3 81.6% 1.7% (many diffs)
7 human 285755 PPIL6 peptidylprolyl isomerase li... XM_011535769.2 77.9% 1.9% (many diffs)
8 human 285755 PPIL6 peptidylprolyl isomerase li... XM_017010774.1 73.9% 2.1% (many diffs)
9 human 285755 PPIL6 peptidylprolyl isomerase li... XM_024446407.1 72.2% 1.6% (many diffs)
10 human 285755 PPIL6 peptidylprolyl isomerase li... NM_001286361.1 63.7% 2% (many diffs)
11 human 285755 PPIL6 peptidylprolyl isomerase li... NR_104429.1 21.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
102
ORF length:
36
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc aaaggccgca gccgtgcggg cccccgcacg ctaggtgcgg ctcgccgtcg
121ctgccggagc ggccgctgca ggtgaaggtg gtggggctct tcagctgccc caactttcag
181attgcgaaga gcgccgctga gaatctgaag aataatcatc catccaaatt tgaagatcct
241atattagttc ctcttcaaga atttgcatgg catcaatatc tacaggagaa aaaaagggaa
301ctcaaaaatg aaacctggga atattcttcc tctgtgattt cttttgttaa tggtcagttt
361ctgggtgatg cattggatct gcagaaatgg gcccacgagg tgtgggatat agttgacatt
421aaaccctctg cactttatga cgcactcact gaggattttt ccgctaagtt cttaagagac
481accaagcatg atttcgtgtt tttggacatt tgtattgatt cttctccaat tggaagattg
541atttttgagc tatactgtga tgtgtgtccc aaaacatgta aaaattttca ggtcttgtgc
601acaggaaaag cagggttttc tcaacgtggc ataagactac attacaaaaa ttccattttt
661catcgaatag tacagaatgg ctggatacaa ggaggggata tagtgtatgg aaaaggagat
721aatggagagt cgatttatgg tccaacattt gaagatgaaa acttttcagt tcctcataat
781aaaagaggag tacttggaat ggccaacaaa ggccgtcaca gcaacgggtc acaattctat
841atcacactgc aagcaactcc ttatctagat agaaaatttg tggcttttgg gcaactgatt
901gaaggaacag aagtgcttaa acaactagaa ttagttccaa cacagaatga aagaccaata
961catatgtgta gaattactga cagtggagat ccttatgctt gcccaacttt cttgtacaaa
1021gtggttggta agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct
1081agcgctaacc ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)

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