Construct: ORF ccsbBroad304_14961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014961.1_s304c1, BRDN0000402036
Derived from:
ccsbBroadEn_14961
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMGB1P1 (10357)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14961
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3146 HMGB1 high mobility group box 1 NM_001313892.1 96.2% 94.8% (many diffs)
2 human 3146 HMGB1 high mobility group box 1 NM_001313893.1 96.2% 94.8% (many diffs)
3 human 3146 HMGB1 high mobility group box 1 NM_001370340.1 96.1% 94.8% (many diffs)
4 human 3146 HMGB1 high mobility group box 1 NM_001370341.1 96.1% 94.8% (many diffs)
5 human 3146 HMGB1 high mobility group box 1 NM_002128.7 96.1% 94.8% (many diffs)
6 human 3146 HMGB1 high mobility group box 1 XM_024449341.1 96.1% 94.8% (many diffs)
7 human 3146 HMGB1 high mobility group box 1 NM_001363661.1 72.9% 72% (many diffs)
8 human 3146 HMGB1 high mobility group box 1 NM_001370339.1 72.9% 72% (many diffs)
9 human 6672 SP100 SP100 nuclear antigen NM_003113.4 20.5% 17.7% (many diffs)
10 mouse 100862258 Gm21596 predicted gene, 21596 XM_003945339.3 89.1% 94.4% (many diffs)
11 mouse 15289 Hmgb1 high mobility group box 1 NM_001313894.1 89% 94.4% (many diffs)
12 mouse 15289 Hmgb1 high mobility group box 1 NM_010439.4 89% 94.4% (many diffs)
13 mouse 628431 Hmgb1-rs17 high mobility group box 1, ... NR_033589.1 37.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
702
ORF length:
633
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggcaaagga gatcctaaga agccgagagg caaaatgtca tcatatgcat
121tttttgtgca aacttgtcgg gaggagcata agaagaagca cccagatgct tcggtcaact
181tctcagagtt ttctaagaag tgctcagaga ggtggaagac catgtctgct aaagagaaag
241gaaaatttga ggatatggca aaggcggaca agacccatta tgaaagacaa atgaaaacct
301atatccctcc caaaggggag acaaaaaaga agttcaagga tcccaatgca cccaagaggc
361ctccttcggc cttcttcctg ttctgctctg agtatcaccc aaaaatcaaa ggagaacatc
421ctggcctgtc cattggtgat gttgcgaaga aactgggaga gatgtggaat aacactgctg
481cagatgacaa gcagcctggt gaaaagaagg ctgcgaagct gaaggaaaaa tacgaaaagg
541atattgctgc atatcaagct aaaggaaagc ctgaggcagc aaaaaaggga gttgtcaagg
601ctgaaaaaag caagaaaaag aaggaagagg aggaagatga ggaagatgaa gaggatgagg
661aggaggaaga tgaagatgaa gaagaagatg atgatgatga attgccaact ttcttgtaca
721aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
781ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)