Construct: ORF ccsbBroad304_15017
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018833.1_s304c1, BRDN0000459317
- Derived from:
- ccsbBroadEn_15017
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TSSK2 (23617)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15017
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23617 | TSSK2 | testis specific serine kina... | NM_053006.5 | 99.6% | 29.9% | (many diffs) |
| 2 | mouse | 22115 | Tssk2 | testis-specific serine kina... | NM_009436.2 | 89.4% | 28.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 681
- ORF length:
- 612
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggacgatgcc acagtcctaa ggaagaaggg ttacatcgta ggcatcaatc 121 ttggcaaggg ttcctacgca aaagtcaaat ctgcctactc tgagcgcctc aagttcaatg 181 tggctgtcaa gatcatcgac cgcaagaaaa cacctactga ctttgtggag agattccttc 241 ctcgggagat ggacatcctg gcaactgtca accacggctc catcatcaag acttacgaga 301 tctttgagac ctctgacgga cggatctaca tcatcatgga gcttggcgtc caggncgacc 361 tccctcgagg ttcatcaagt gccagggagc cctgcatgag gacgtggcac gcaagatgtt 421 ccgacagctc tcctccgccg tcaagtactg ccacgacctg gacatcgtcc accgggacct 481 caagtgcgag aaccttctcc tcgacaagga cttcaacatc aagctgtctg actttggctt 541 ctccaagcgc tgcctgcggg acagcaatgg gcgcatcatc ctcagcaaga ccttctgcgg 601 gtcggcagca tatgcagccc ccgaggtgct gcagagcatc ccctaccagc ccaaggtgta 661 tgacatctgg agcctgggcg tgatcctgta catcatggtc tgcggctcca tgccctatga 721 cgactccgac atcangaaga tgctgcgtat ccagaaggag caccgtgtgg acttcccgcg 781 ctccaagaac ctgacctgcg agtgcaagga cctcatctac cgcatgctgc agcccgacgt 841 cagccagcgg ctccacatcg atgagatcct cagccactcg tggctgcagc cccccaagcc 901 caaagccacg tcttctgcct ccttcaagag ggagggggag ggcaagtacc gcgctgagtg 961 caaactggac accaagacag gcttgaggcc cgaccaccgg cccgaccaca agcttggagc 1021 caaaacccag caccggctgc tggtggtgcc cgagaacgag aacaggatgg aggacaggct 1081 ggccgagacc tccagggcca aagaccatca catctccgga gctgaggtgg ggaaagcaag 1141 caccttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc ctctcctcgg 1201 tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa 1261 cctctggatt a