Construct: ORF ccsbBroad304_15225

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018832.1_s304c1, BRDN0000459316
Derived from:
ccsbBroadEn_15225
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
SLAMF6 (114836)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15225
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114836 SLAMF6 SLAM family member 6 NM_052931.5 99.2% 22.4% (many diffs)
2 human 114836 SLAMF6 SLAM family member 6 NM_001184714.2 98.9% 22.3% (many diffs)
3 human 114836 SLAMF6 SLAM family member 6 XM_017000215.2 94.7% 22.1% (many diffs)
4 human 114836 SLAMF6 SLAM family member 6 NM_001184715.2 84.5% 7.7% (many diffs)
5 human 114836 SLAMF6 SLAM family member 6 XM_017000216.1 84.2% 7.7% (many diffs)
6 human 114836 SLAMF6 SLAM family member 6 XM_017000217.1 66% 15.1% 49_50ins335;419_420delGAinsNN;481_482insA
7 human 114836 SLAMF6 SLAM family member 6 NM_001184716.2 65.8% 15% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
327
ORF length:
258
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttgtggctg ttccaatcgc tcctgtttgt cttctgcttt ggcccaggga
121atgtagtttc acaaagcagc ttaaccccat tgatggtgaa cgggattctg ggggagtcag
181taactcttcc cctggagttt cctgcaggag agaaggtcaa cttcatcact tggcttttca
241atgaaacatc tcttgccttc atagtacccc atgaaaccaa aagtcccaga aatccacgtg
301gactaatccg aaacagggaa agcgactgaa cttcacccag nnctactccc tgcaactcag
361caacctgaag atggaagaca caggctctta cagagcccag atatccacaa agacctctgc
421aaagctgtcc agttacactc tgaggatatt aagacaactg aggaacatac aagttaccaa
481tcacagtcag ctatttcaga atatgacctg tgagctccat ctgacttgct ctgtggagga
541tgcagatgac aatgtctcat tcagatggga ggccttggga aacacacttt caagtcagcc
601aaacctcact gtctcctggg accccaggat ttccagtgaa caggactaca cctgcatagc
661agagaatgct gtcagtaatt tatccttctc tgtctctgcc cagaagcttt gcgaagatgt
721taaaattcaa tatacagata ccaaaatgat tctgtttatg gtttctggga tatgcatagt
781cttcggtttc atcatactgc tgttacttgt tttgaggaaa annagagatt ccctatcttt
841gtctactcag cgaacacagg gccccgagtc cgcaaggaac ctagaagtat gtttcagtgt
901ctccaacgaa caacactgtg tatgcttcag tcactcattc aaacagggaa acagaaatct
961ggacacctag agaaaatgat actatcacaa tttactccac aattaatcat tccaaagaga
1021gtaaacccac tttttccagg gcaactgccc ttgacaatgt cgtgttgcca actttcttgt
1081acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1141gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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