Construct: ORF ccsbBroadEn_15225
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018832.1_s300c1, BRDN0000458128
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SLAMF6 (114836)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_052931.5 | 99.2% | 22.4% | (many diffs) |
| 2 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_001184714.2 | 98.9% | 22.3% | (many diffs) |
| 3 | human | 114836 | SLAMF6 | SLAM family member 6 | XM_017000215.2 | 94.7% | 22.1% | (many diffs) |
| 4 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_001184715.2 | 84.5% | 7.7% | (many diffs) |
| 5 | human | 114836 | SLAMF6 | SLAM family member 6 | XM_017000216.1 | 84.2% | 7.7% | (many diffs) |
| 6 | human | 114836 | SLAMF6 | SLAM family member 6 | XM_017000217.1 | 66% | 15.1% | 49_50ins335;419_420delGAinsNN;481_482insA |
| 7 | human | 114836 | SLAMF6 | SLAM family member 6 | NM_001184716.2 | 65.8% | 15% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 81
- ORF end:
- 339
- ORF length:
- 258
- Sequence:
-
1 AGATAGTGAC CTGTTCGTTG CAACAAATTG ATGAGCAATG CTTTTTTATA ATGCCAACTT 61 TGTACAAAAA AGTTGGCACC ATGTTGTGGC TGTTCCAATC GCTCCTGTTT GTCTTCTGCT 121 TTGGCCCAGG GAATGTAGTT TCACAAAGCA GCTTAACCCC ATTGATGGTG AACGGGATTC 181 TGGGGGAGTC AGTAACTCTT CCCCTGGAGT TTCCTGCAGG AGAGAAGGTC AACTTCATCA 241 CTTGGCTTTT CAATGAAACA TCTCTTGCCT TCATAGTACC CCATGAAACC AAAAGTCCCA 301 GAAATCCACG TGGACTAATC CGAAACAGGG AAAGCGACTG AACTTCACCC AGNNCTACTC 361 CCTGCAACTC AGCAACCTGA AGATGGAAGA CACAGGCTCT TACAGAGCCC AGATATCCAC 421 AAAGACCTCT GCAAAGCTGT CCAGTTACAC TCTGAGGATA TTAAGACAAC TGAGGAACAT 481 ACAAGTTACC AATCACAGTC AGCTATTTCA GAATATGACC TGTGAGCTCC ATCTGACTTG 541 CTCTGTGGAG GATGCAGATG ACAATGTCTC ATTCAGATGG GAGGCCTTGG GAAACACACT 601 TTCAAGTCAG CCAAACCTCA CTGTCTCCTG GGACCCCAGG ATTTCCAGTG AACAGGACTA 661 CACCTGCATA GCAGAGAATG CTGTCAGTAA TTTATCCTTC TCTGTCTCTG CCCAGAAGCT 721 TTGCGAAGAT GTTAAAATTC AATATACAGA TACCAAAATG ATTCTGTTTA TGGTTTCTGG 781 GATATGCATA GTCTTCGGTT TCATCATACT GCTGTTACTT GTTTTGAGGA AAANNAGAGA 841 TTCCCTATCT TTGTCTACTC AGCGAACACA GGGCCCCGAG TCCGCAAGGA ACCTAGAAGT 901 ATGTTTCAGT GTCTCCAACG AACAACACTG TGTATGCTTC AGTCACTCAT TCAAACAGGG 961 AAACAGAAAT CTGGACACCT AGAGAAAATG ATACTATCAC AATTTACTCC ACAATTAATC 1021 ATTCCAAAGA GAGTAAACCC ACTTTTTCCA GGGCAACTGC CCTTGACAAT GTCGTGTTGC 1081 CAACTTTCTT GTACAAAGTT GGCATTATAA GAAAGCATTG CTTATCAATT TGTTGCAACG 1141 AACAGGTCAC TATCAGTCAA AATAAAATCA TTATTTGCCA TCCA