Construct: ORF ccsbBroad304_15338

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018830.1_s304c1, BRDN0000459314
Derived from:
ccsbBroadEn_15338
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LOC652799 (652799)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15338
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3815 KIT KIT proto-oncogene, recepto... XM_017008180.1 24.6% 24.5% (many diffs)
2 human 3815 KIT KIT proto-oncogene, recepto... NM_001093772.1 24.5% 24.4% (many diffs)
3 human 3815 KIT KIT proto-oncogene, recepto... XM_017008179.1 24.5% 24.4% (many diffs)
4 human 3815 KIT KIT proto-oncogene, recepto... XM_005265742.3 24.5% 24.4% (many diffs)
5 human 3815 KIT KIT proto-oncogene, recepto... XM_017008178.1 24.5% 24.4% (many diffs)
6 human 3815 KIT KIT proto-oncogene, recepto... NM_000222.2 24.4% 24.3% (many diffs)
7 human 3815 KIT KIT proto-oncogene, recepto... XM_005265741.1 24.4% 24.3% (many diffs)
8 human 3815 KIT KIT proto-oncogene, recepto... XM_005265740.1 24.4% 24.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
795
ORF length:
726
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gataaacact acagtatttg taaacgatgg agaaaatgta gatttgattg
121ttgaatatga agcattcccc aaacctgaac accagcagtg gatctatatg aacagaacct
181tcactgataa atgggaagat tatcccaagt ctgagaatga aagtaatatc agatacgtaa
241gtgaacttca tctaacgaga ttaaaaggca ccgaaggagg cacttacaca ttcctagtgt
301ccaattctga cgtcaatgct gccatagcat ttaatgttta tgtgaataca aaaccagaaa
361tcctgactta cgacaggctc gtgaatggca tgctccaatg tgtggcagca ggattcccag
421agcccacaat agattggtat ttttgtccag gaactgagca gagatgctct gcttctgtac
481tgccagtgga tgtgcagaca ctaaactcat ctgggccacc gtttggaaag ctagtggttc
541agagttctat agattctagt gcattcaagc acaatggcac ggttgaatgt aaggcttaca
601acgatgtggg caagacttct gcctatttta actttgcatt taaagagcaa atccatcccc
661acaccctgtt cactcctttg ctgattggtt tcgtaatcgt agctggcatg atgtgcatta
721ttgtgatgat tctgacctac aaatatttac agaaacccat gtnnnnagta cagtgganng
781ttgttganga gattgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct
841ctcctcggtc tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg
901acaatcaacc tctggatta

Download FASTA (ORF) (Full)