Construct: ORF ccsbBroadEn_15338
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018830.1_s300c1, BRDN0000458126
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC652799 (652799)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3815 | KIT | KIT proto-oncogene, recepto... | XM_017008180.1 | 24.6% | 24.5% | (many diffs) |
| 2 | human | 3815 | KIT | KIT proto-oncogene, recepto... | NM_001093772.1 | 24.5% | 24.4% | (many diffs) |
| 3 | human | 3815 | KIT | KIT proto-oncogene, recepto... | XM_017008179.1 | 24.5% | 24.4% | (many diffs) |
| 4 | human | 3815 | KIT | KIT proto-oncogene, recepto... | XM_005265742.3 | 24.5% | 24.4% | (many diffs) |
| 5 | human | 3815 | KIT | KIT proto-oncogene, recepto... | XM_017008178.1 | 24.5% | 24.4% | (many diffs) |
| 6 | human | 3815 | KIT | KIT proto-oncogene, recepto... | NM_000222.2 | 24.4% | 24.3% | (many diffs) |
| 7 | human | 3815 | KIT | KIT proto-oncogene, recepto... | XM_005265741.1 | 24.4% | 24.3% | (many diffs) |
| 8 | human | 3815 | KIT | KIT proto-oncogene, recepto... | XM_005265740.1 | 24.4% | 24.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 100
- ORF end:
- 826
- ORF length:
- 726
- Sequence:
-
1 TATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AAGCAATGCT 61 TTTTTATAAT GCCCAACTTT GTACAAAAAA GTTGGCACCA TGATAAACAC TACAGTATTT 121 GTAAACGATG GAGAAAATGT AGATTTGATT GTTGAATATG AAGCATTCCC CAAACCTGAA 181 CACCAGCAGT GGATCTATAT GAACAGAACC TTCACTGATA AATGGGAAGA TTATCCCAAG 241 TCTGAGAATG AAAGTAATAT CAGATACGTA AGTGAACTTC ATCTAACGAG ATTAAAAGGC 301 ACCGAAGGAG GCACTTACAC ATTCCTAGTG TCCAATTCTG ACGTCAATGC TGCCATAGCA 361 TTTAATGTTT ATGTGAATAC AAAACCAGAA ATCCTGACTT ACGACAGGCT CGTGAATGGC 421 ATGCTCCAAT GTGTGGCAGC AGGATTCCCA GAGCCCACAA TAGATTGGTA TTTTTGTCCA 481 GGAACTGAGC AGAGATGCTC TGCTTCTGTA CTGCCAGTGG ATGTGCAGAC ACTAAACTCA 541 TCTGGGCCAC CGTTTGGAAA GCTAGTGGTT CAGAGTTCTA TAGATTCTAG TGCATTCAAG 601 CACAATGGCA CGGTTGAATG TAAGGCTTAC AACGATGTGG GCAAGACTTC TGCCTATTTT 661 AACTTTGCAT TTAAAGAGCA AATCCATCCC CACACCCTGT TCACTCCTTT GCTGATTGGT 721 TTCGTAATCG TAGCTGGCAT GATGTGCATT ATTGTGATGA TTCTGACCTA CAAATATTTA 781 CAGAAACCCA TGTNNNNAGT ACAGTGGANN GTTGTTGANG AGATTGCCAA CTTTCTTGTA 841 CAAAGTTGGC ATTATAAGNA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGNNNNNNNN 901 NNNNCAAAAT AAAATCATTA TTGCCATCCA GCGAGCGAGA