Construct: ORF ccsbBroad304_15415
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012899.1_s304c1, BRDN0000403507
- Derived from:
- ccsbBroadEn_15415
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FDFT1 (2222)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15415
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287742.1 | 100% | 100% | |
| 2 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287743.1 | 100% | 100% | |
| 3 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_004462.5 | 99.9% | 100% | 631T>C |
| 4 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287750.1 | 84.9% | 77.7% | (many diffs) |
| 5 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287744.1 | 84.6% | 84.6% | 0_1ins192 |
| 6 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287745.1 | 84.6% | 84.6% | 0_1ins192 |
| 7 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287747.1 | 84.6% | 84.6% | 0_1ins192 |
| 8 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287748.1 | 84.6% | 84.6% | 0_1ins192 |
| 9 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287749.1 | 84.6% | 84.6% | 0_1ins192 |
| 10 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287751.1 | 79.6% | 79.6% | 0_1ins255 |
| 11 | human | 2222 | FDFT1 | farnesyl-diphosphate farnes... | NM_001287756.1 | 59.9% | 55.5% | 0_1insATGGAGTTCGTGAA;62_63ins487 |
| 12 | mouse | 14137 | Fdft1 | farnesyl diphosphate farnes... | NM_010191.3 | 84.9% | 88.2% | (many diffs) |
| 13 | mouse | 14137 | Fdft1 | farnesyl diphosphate farnes... | XM_017315844.1 | 84.9% | 88.2% | (many diffs) |
| 14 | mouse | 14137 | Fdft1 | farnesyl diphosphate farnes... | XM_006518547.3 | 55.4% | 57.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1317
- ORF length:
- 1251
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga gttcgtgaaa tgccttggcc accccgaaga gttctacaac ctggtgcgct 121 tccggatcgg gggcaagcgg aaggtgatgc ccaagatgga ccaggactcg ctcagcagca 181 gcctgaaaac ttgctacaag tatctcaatc agaccagtcg cagtttcgca gctgttatcc 241 aggcgctgga tggggaaatg cgcaacgcag tgtgcatatt ttatctggtt ctccgagctc 301 tggacacact ggaagatgac atgaccatca gtgtggaaaa gaaggtcccg ctgttacaca 361 actttcactc tttcctttac caaccagact ggcggttcat ggagagcaag gagaaggatc 421 gccaggtgct ggaggacttc ccaacgatct cccttgagtt tagaaatctg gctgagaaat 481 accaaacagt gattgccgac atttgccgga gaatgggcat tgggatggca gagtttttgg 541 ataagcatgt gacctctgaa caggagtggg acaagtactg ccactatgtt gctgggctgg 601 tcggaattgg cctttcccgt cttttctcag cctcagagtt tgaagacccc ttagttggtg 661 aagatacaga acgtgccaac tctatgggcc tgtttctgca gaaaacaaac atcatccgtg 721 actatctgga agaccagcaa ggaggaagag agttctggcc tcaagaggtt tggagcaggt 781 atgttaagaa gttaggggat tttgctaagc cggagaatat tgacttggcc gtgcagtgcc 841 tgaatgaact tataaccaat gcactgcacc acatcccaga tgtcatcacc tacctttcga 901 gactcagaaa ccagagtgtg tttaacttct gtgctattcc acaggtgatg gccattgcca 961 ctttggctgc ctgttataat aaccagcagg tgttcaaagg ggcagtgaag attcggaaag 1021 ggcaagcagt gaccctgatg atggatgcca ccaatatgcc agctgtcaaa gccatcatat 1081 atcagtatat ggaagagatt tatcatagaa tccccgactc agacccatct tctagcaaaa 1141 caaggcagat catctccacc atccggacgc agaatcttcc caactgtcag ctgatttccc 1201 gaagccacta ctcccccatc tacctgtcgt ttgtcatgct tttggctgcc ctgagctggc 1261 agtacctgac cactctctcc caggtaacag aagactatgt tcagactgga gaacactnnc 1321 caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt 1381 ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga 1441 tta