Construct: ORF ccsbBroad304_15542

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017766.1_s304c1, BRDN0000402913
Derived from:
ccsbBroadEn_15542
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSMA3 (5684)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15542
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5684 PSMA3 proteasome 20S subunit alpha 3 NM_152132.2 100% 100%
2 human 5684 PSMA3 proteasome 20S subunit alpha 3 NM_002788.4 97.2% 97.2% 402_422del
3 human 5684 PSMA3 proteasome 20S subunit alpha 3 NR_038123.1 72.7% (many diffs)
4 mouse 19167 Psma3 proteasome (prosome, macrop... NM_011184.5 89.4% 96% (many diffs)
5 mouse 19167 Psma3 proteasome (prosome, macrop... XM_017314996.1 89.4% 96% (many diffs)
6 mouse 19167 Psma3 proteasome (prosome, macrop... NM_001310595.1 62% 66.6% (many diffs)
7 mouse 19167 Psma3 proteasome (prosome, macrop... NM_001310596.1 62% 66.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
810
ORF length:
744
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag ctcaatcggc actgggtatg acctgtcagc ctctacattc tctcctgacg
121gaagagtttt tcaagttgaa tatgctatga aggctgtgga aaatagtagt acagctattg
181gaatcagatg caaagatggt gttgtctttg gggtagaaaa attagtcctt tctaaacttt
241atgaagaagg ttccaacaaa agacttttta atgttgatcg gcatgttgga atggcagtag
301caggtttgtt ggcagatgct cgttctttag cagacatagc aagagaagaa gcttccaact
361tcagatctaa ctttggctac aacattccac taaaacatct tgcagacaga gtggccatgt
421atgtgcatgc atatacactc tacagtgctg ttagaccttt tggctgcagt gtgaatgacg
481gtgcgcaact ctacatgatt gacccatcag gtgtttcata cggttattgg ggctgtgcca
541tcggcaaagc caggcaagct gcaaagacgg aaatagagaa gcttcagatg aaagaaatga
601cctgccgtga tatcgttaaa gaagttgcaa aaataattta catagtacat gacgaagtta
661aggataaagc ttttgaacta gaactcagct gggttggtga attaactaat ggaagacatg
721aaattgttcc aaaagatata agagaagaag cagagaaata tgctaaggaa tctctgaagg
781aagaagatga atcagatgat gataatatgt nnccaacttt cttgtacaaa gtggttggta
841agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
901ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)