Construct: ORF ccsbBroad304_15744

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018267.1_s304c1, BRDN0000408239
Derived from:
ccsbBroadEn_15744
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
R3HDM2 (22864)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15744
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22864 R3HDM2 R3H domain containing 2 XM_017019032.1 100% 100%
2 human 22864 R3HDM2 R3H domain containing 2 XM_017019033.1 100% 100%
3 human 22864 R3HDM2 R3H domain containing 2 XM_017019031.1 94.9% 94.9% 285_386del
4 human 22864 R3HDM2 R3H domain containing 2 XM_024448888.1 90.6% 90.6% 1_198del
5 human 22864 R3HDM2 R3H domain containing 2 XM_024448887.1 77.5% 77.5% 1_552del
6 human 22864 R3HDM2 R3H domain containing 2 XM_024448886.1 75.9% 75.9% 1_606del
7 human 22864 R3HDM2 R3H domain containing 2 XM_017019029.2 67.9% 67.9% 1_903del
8 human 22864 R3HDM2 R3H domain containing 2 XM_017019020.1 67.3% 67.3% 1_927del
9 human 22864 R3HDM2 R3H domain containing 2 NM_001351217.2 66.4% 66.4% 1_963del
10 human 22864 R3HDM2 R3H domain containing 2 NM_001351218.2 66.4% 66.4% 1_963del
11 human 22864 R3HDM2 R3H domain containing 2 NM_001330123.2 65.9% 65.9% 1_987del
12 human 22864 R3HDM2 R3H domain containing 2 NM_014925.5 65.2% 65.2% 1_1017del
13 human 22864 R3HDM2 R3H domain containing 2 XM_017019012.1 65.1% 65.1% 1_1023del
14 human 22864 R3HDM2 R3H domain containing 2 XM_017019009.1 64.7% 64.7% 1_1041del
15 human 22864 R3HDM2 R3H domain containing 2 NM_001351216.2 64.4% 64.4% 1_1053del
16 human 22864 R3HDM2 R3H domain containing 2 XM_024448885.1 64.4% 64.4% 1_1053del
17 human 22864 R3HDM2 R3H domain containing 2 XM_017019008.1 64.4% 64.4% 1_987del;2474_2542del
18 human 22864 R3HDM2 R3H domain containing 2 NM_001351212.2 64.2% 64.2% 1_963del;1248_1349del
19 human 22864 R3HDM2 R3H domain containing 2 NM_001351213.2 64.2% 64.2% 1_963del;1248_1349del
20 human 22864 R3HDM2 R3H domain containing 2 NM_001351214.2 64.2% 64.2% 1_963del;1248_1349del
21 human 22864 R3HDM2 R3H domain containing 2 NM_001351215.2 64.2% 64.2% 1_963del;1248_1349del
22 human 22864 R3HDM2 R3H domain containing 2 NM_001351211.2 63.8% 63.8% 1_1083del
23 human 22864 R3HDM2 R3H domain containing 2 XM_017019004.1 63.8% 63.8% 1_981del;1266_1367del
24 human 22864 R3HDM2 R3H domain containing 2 XM_017019003.1 63.7% 63.7% 1_987del;1272_1373del
25 human 22864 R3HDM2 R3H domain containing 2 NM_001351209.2 63.1% 63.1% 1_1113del
26 human 22864 R3HDM2 R3H domain containing 2 XM_017019002.1 63.1% 63.1% 1_1113del
27 human 22864 R3HDM2 R3H domain containing 2 NM_001330121.2 63% 63% 1_1017del;1302_1403del
28 human 22864 R3HDM2 R3H domain containing 2 NM_001330122.2 63% 63% 1_1017del;1302_1403del
29 human 22864 R3HDM2 R3H domain containing 2 XM_017019015.1 62.9% 62.9% 1_954del;1239_1340del;2543_2611del
30 human 22864 R3HDM2 R3H domain containing 2 XM_011538040.1 62.6% 62.6% 1_1137del
31 human 22864 R3HDM2 R3H domain containing 2 XM_017019000.1 62.5% 62.5% 1_1041del;1326_1427del
32 human 22864 R3HDM2 R3H domain containing 2 XM_011538039.1 62.3% 62.3% 1_1083del;2570_2638del
33 human 22864 R3HDM2 R3H domain containing 2 XM_011538038.1 62.2% 62.2% 1_987del;1272_1373del;2576_2644del
34 human 22864 R3HDM2 R3H domain containing 2 NM_001351208.2 62.2% 62.2% 1_1059del;1344_1445del
35 human 22864 R3HDM2 R3H domain containing 2 XM_017019013.1 62.2% 62.2% 1_1059del;1344_1445del
36 human 22864 R3HDM2 R3H domain containing 2 XM_024448884.1 62.2% 62.2% 1_1059del;1344_1445del
37 human 22864 R3HDM2 R3H domain containing 2 NM_001351207.2 61.7% 61.7% 1_1083del;1368_1469del
38 human 22864 R3HDM2 R3H domain containing 2 XM_011538037.1 61.6% 61.6% 1_1017del;1302_1403del;2606_2674del
39 human 22864 R3HDM2 R3H domain containing 2 XM_017019010.1 61.6% 61.6% 1_1017del;1302_1403del;2606_2674del
40 human 22864 R3HDM2 R3H domain containing 2 XM_011538036.1 61.3% 61.3% 1_1137del;2624_2692del
41 human 22864 R3HDM2 R3H domain containing 2 XM_011538035.1 61.1% 61.1% 1_1041del;1326_1427del;2630_2698del
42 human 22864 R3HDM2 R3H domain containing 2 NM_001351204.2 61.1% 61.1% 1_1113del;1398_1499del
43 human 22864 R3HDM2 R3H domain containing 2 NM_001351205.2 61.1% 61.1% 1_1113del;1398_1499del
44 human 22864 R3HDM2 R3H domain containing 2 NM_001351206.2 61.1% 61.1% 1_1113del;1398_1499del
45 human 22864 R3HDM2 R3H domain containing 2 XM_017018998.1 60.8% 60.8% 1_1059del;1344_1445del;2648_2716del
46 human 22864 R3HDM2 R3H domain containing 2 XM_011538033.1 60.6% 60.6% 1_1137del;1422_1523del
47 human 22864 R3HDM2 R3H domain containing 2 XM_011538031.1 60.3% 60.3% 1_1083del;1368_1469del;2672_2740del
48 human 22864 R3HDM2 R3H domain containing 2 XM_024448883.1 59.8% 59.8% 1_1113del;1398_1499del;2702_2770del
49 human 22864 R3HDM2 R3H domain containing 2 XM_011538042.2 59.3% 59.3% 1_1137del;1422_1523del;2726_2794del
50 human 22864 R3HDM2 R3H domain containing 2 XM_017018999.2 59.3% 59.3% 1_1137del;1422_1523del;2726_2794del
51 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514165.2 82.2% 82.5% (many diffs)
52 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514166.2 82.2% 82.5% (many diffs)
53 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514164.2 60.6% 63.3% (many diffs)
54 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514163.2 59.5% 62.1% (many diffs)
55 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514162.2 58.6% 61.2% (many diffs)
56 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514161.2 58.5% 61.1% (many diffs)
57 mouse 71750 R3hdm2 R3H domain containing 2 NM_027900.4 58.2% 60.8% (many diffs)
58 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514160.2 57.6% 60.1% (many diffs)
59 mouse 71750 R3hdm2 R3H domain containing 2 NM_001168293.1 57.5% 60% (many diffs)
60 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514159.2 57.5% 60% (many diffs)
61 mouse 71750 R3hdm2 R3H domain containing 2 XM_017314104.1 57.5% 60% (many diffs)
62 mouse 71750 R3hdm2 R3H domain containing 2 XM_017314105.1 57.5% 60% (many diffs)
63 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514158.2 56.7% 59.2% (many diffs)
64 mouse 71750 R3hdm2 R3H domain containing 2 XM_017314103.1 56.7% 59.2% (many diffs)
65 mouse 71750 R3hdm2 R3H domain containing 2 NM_001168292.1 55.7% 58.2% (many diffs)
66 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514152.2 55.7% 58.2% (many diffs)
67 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514153.2 55.7% 58.2% (many diffs)
68 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514154.3 55.7% 58.2% (many diffs)
69 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514155.3 55.7% 58.2% (many diffs)
70 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514156.3 55.7% 58.2% (many diffs)
71 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514157.2 55.7% 58.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1980
ORF length:
1911
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcgaccccct gtcaccaaag ctagcagctt cagtggaatc tctatcctta
121cccgaggtga cagcatcggc agcagtaaag gcggcagtgc gggaaggatc tccaggccag
181gtatggcact aggtgcccca gaagtgtgca accaggtcac ctcatcccag tctgtccggg
241ggcttctccc ttgtactgcc cagcagcaac agcagcagca gcagcagcaa cttcctgctc
301tcccacccac gcctcagcaa cagccaccct tgaataatca catgatctca caggcagatg
361acctcagcaa cccctttgga caaatgagcc ttagtcgcca aggttctact gaagcagctg
421acccatctgc agctctattc cagaccccac ttatctccca gcaccctcag cagactagct
481tcatcatggc ttccacgggt cagcccctcc ccacttccaa ctattccacc tctagccatg
541caccacctac tcagcaagtt ctgccacccc aggggtacat gcagccccct caacagatcc
601aggtttctta ctatccccct ggacaatatc ctaactccaa ccagcaatat cgacctctct
661ctcacccggt ggcctatagc ccccaacgtg gtcagcagct gcctcagcca tcccagcagc
721ctggtttaca gcccatgatg cctaaccagc agcaggcggc ttaccaaggc atgattgggg
781tccagcagcc acagaaccag ggcctgctca gcagccagag gagcagcatg gggggccaga
841tgcaaggcct ggtggttcag tacactccac tgccttctta ccaagttcca gtgggtagtg
901actcgcaaaa tgtggtccag ccgcctttcc agcaacccat gctggtccct gtgagccagt
961ctgtgcaagg aggcctccca gcagcggggg taccagtgta ctatagcatg atcccacctg
1021ctcagcagaa cggtacgagc ccttctgtag ggtttctgca accccctggc tctgagcagt
1081accagatgcc tcagtctccc tctccctgca gtccaccaca gatgccacag cagtactcag
1141gagtgtcacc ttctggacca ggtgtagtgg tcatgcagct gaatgtccct aatggacccc
1201agccccctca gaacccatcc atggtccagt ggagtcattg taaatactac agcatggacc
1261agcgggggca gaagcctgga gacctgtaca gtcctgacag cagcccccag gccaacacac
1321aaatgagcag cagccctgtc acatctccta cccagtctcc agcaccctct cctgtcacca
1381gcctcagcag tgtctgcaca ggactcagtc ccctgcctgt cctcacacag ttcccccggc
1441ctgggggtcc agcacagggt gatgggcgct actccctttt gggccagcca ttacagtaca
1501atctgtccat ctgccctccc ttgctccatg gccagtcaac ttacacggtg caccagggac
1561agagtggact gaagcatgga aaccggggca agagacaagc actcaaatct gcctccactg
1621acctggggac agcagatgtt gtcctggggc gggtgctgga ggtgacagat ctccctgagg
1681gcatcacccg tactgaggcg gacaaactct tcacgcagct cgccatgtct ggcgccaaga
1741tccagtggct caaggatgct caggggctgc ctggaggggg tgggggggac aacagtggga
1801ctgctgagaa tggccgccac tcggacctcg ctgccttgta caccattgtg gctgtgttcc
1861ccagccccct ggctgcccaa aatgcctccc ttcgtctcaa caactccgtg agtcgcttca
1921aacttcgaat ggccaaaaag aactatgacc tgaggatcct ggagcgagcc agctcccaat
1981nnccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
2041attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
2101ggatta

Download FASTA (ORF) (Full)