Construct: ORF ccsbBroad304_15853
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008058.1_s304c1, BRDN0000404927
- Derived from:
- ccsbBroadEn_15853
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DYNC2LI1 (51626)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15853
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51626 | DYNC2LI1 | dynein cytoplasmic 2 light ... | NM_015522.3 | 67.9% | 57.2% | (many diffs) |
| 2 | human | 51626 | DYNC2LI1 | dynein cytoplasmic 2 light ... | NM_016008.4 | 39.5% | 32.7% | (many diffs) |
| 3 | human | 51626 | DYNC2LI1 | dynein cytoplasmic 2 light ... | NM_001193464.2 | 39.4% | 32.6% | (many diffs) |
| 4 | human | 51626 | DYNC2LI1 | dynein cytoplasmic 2 light ... | NM_001348912.1 | 37.1% | 30.8% | (many diffs) |
| 5 | human | 51626 | DYNC2LI1 | dynein cytoplasmic 2 light ... | NM_001348913.1 | 37% | 30.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 498
- ORF length:
- 432
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc cagtgaaact ctctgggaaa ttgcaaaagc tgaagtggaa aaaaggggaa 121 ttaatggaag tgaaggtgat ggagctgaaa ttgcagaaaa atttgttttc ttcattggca 181 gtaaaaatgg gggaaagact actattattc taaggtgtct tgacagagat gaaccaccaa 241 aaccaacctt agctttggaa tatacatatg gaagaagagc aaaagggcac aacacaccaa 301 aagatatcgc tcacttttgg gaactcggtg gaggaacctc tttattggac ttaatcagca 361 tacccatcac aggtgacacc ttacgctcct ggcaactatc atccctactg cctgtctcta 421 tgaatttgac cactccagta cctcatataa atgaaatcat tcattatttg tccttttgtt 481 atttatttca tttagcatnn ccaactttct tgtacaaagt ggttggtaag cctatcccta 541 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 601 agtcgacaat caacctctgg atta