Construct: ORF ccsbBroad304_15901
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005559.1_s304c1, BRDN0000411170
- Derived from:
- ccsbBroadEn_15901
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLK15 (55554)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15901
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55554 | KLK15 | kallikrein related peptidas... | NM_001277081.1 | 100% | 100% | |
| 2 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527085.2 | 100% | 100% | |
| 3 | human | 55554 | KLK15 | kallikrein related peptidas... | NM_017509.3 | 99.6% | 99.6% | 41_43delCAG |
| 4 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_006723265.3 | 99.6% | 99.6% | 41_43delCAG |
| 5 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527087.2 | 66.4% | 66.4% | 41_43delCAG;361_362ins255 |
| 6 | human | 55554 | KLK15 | kallikrein related peptidas... | NM_001277082.1 | 62.6% | 62.3% | 479G>T;480_481ins285 |
| 7 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527089.2 | 62.6% | 62.3% | 479G>T;480_481ins285 |
| 8 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_011527088.2 | 62.3% | 62.1% | 41_43delCAG;482G>T;483_484ins285 |
| 9 | human | 55554 | KLK15 | kallikrein related peptidas... | NR_102274.1 | 48.9% | 1_31del;389_390ins118;679_1204del | |
| 10 | human | 55554 | KLK15 | kallikrein related peptidas... | XM_017026943.1 | 46.8% | 46.8% | 41_43delCAG;363_364ins405 |
| 11 | human | 55554 | KLK15 | kallikrein related peptidas... | XR_001753713.1 | 30.5% | 1_842del;1200_1201ins118;1490_1999del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 831
- ORF length:
- 765
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtg gcttctcctc actctctcct tcctgctggc atccacagcc caggatggtg 121 acaagttgct ggaaggtgac gagtgtgcac cccactccca gccatggcaa gtggctctct 181 acgagcgtgg acgctttaac tgtggcgctt ccctcatctc cccacactgg gtgctgtctg 241 cggcccactg ccaaagccgc ttcatgagag tgcgcctggg agagcacaac ctgcgcaagc 301 gcgatggccc agagcaacta cggaccacgt ctcgggtcat tccacacccg cgctacgaag 361 cgcgcagcca ccgcaacgac atcatgttgc tgcgcctagt ccagcccgca cgcctgaacc 421 cccaggtgcg ccccgcggtg ctacccacgc gttgccccca cccgggggag gcctgtgtgg 481 tgtctggctg gggcctggtg tcccacaacg agcctgggac cgctgggagc ccccggtcac 541 aagtgagtct cccagatacg ttgcattgtg ccaacatcag cattatctcg gacacatctt 601 gtgacaagag ctacccaggg cgcctgacaa acaccatggt gtgtgcaggc gcggagggca 661 gaggcgcaga atcctgtgag ggtgactctg ggggacccct ggtctgtggg ggcatcctgc 721 agggcattgt gtcctggggt gacgtccctt gtgacaacac caccaagcct ggtgtctata 781 ccaaagtctg ccactacttg gagtggatca gggaaaccat gaagaggaac tnnccaactt 841 tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt 901 agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta