Construct: ORF ccsbBroad304_15930

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004178.1_s304c1, BRDN0000402889
Derived from:
ccsbBroadEn_15930
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PMEPA1 (56937)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15930
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56937 PMEPA1 prostate transmembrane prot... NM_199170.3 99.8% 100% 291A>G
2 human 56937 PMEPA1 prostate transmembrane prot... NM_199171.2 99.8% 100% 291A>G
3 human 56937 PMEPA1 prostate transmembrane prot... NM_199169.3 93.9% 94% 1_45del;336A>G
4 human 56937 PMEPA1 prostate transmembrane prot... NM_001255976.2 91.3% 91.5% 1_66del;357A>G
5 human 56937 PMEPA1 prostate transmembrane prot... NM_020182.5 82.4% 82.5% 1_150del;441A>G
6 mouse 65112 Pmepa1 prostate transmembrane prot... NM_022995.3 70.5% 74.5% (many diffs)
7 mouse 65112 Pmepa1 prostate transmembrane prot... XM_006499991.3 62.2% 65.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
777
ORF length:
711
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgat ggtgatggtg gtggtgatca cgtgcctgct gagccactac aagctgtctg
121cacggtcctt catcagccgg cacagccagg ggcggaggag agaagatgcc ctgtcctcag
181aaggatgcct gtggccctcg gagagcacag tgtcaggcaa cggaatccca gagccgcagg
241tctacgcccc gcctcggccc accgaccgcc tggccgtgcc gcccttcgcc cagcgggagc
301gcttccaccg cttccagccc acctatccgt acctgcagca cgagatcgac ctgccgccca
361ccatctcgct gtcagacggg gaggagcccc caccctacca gggcccctgc accctccagc
421ttcgggaccc cgagcagcag ctggaactga accgggagtc ggtgcgcgca cccccaaaca
481gaaccatctt cgacagtgac ctgatggata gtgccaggct gggcggcccc tgccccccca
541gcagtaactc gggcatcagc gccacgtgct acggcagcgg cgggcgcatg gaggggccgc
601cgcccaccta cagcgaggtc atcggccact acccggggtc ctccttccag caccagcaga
661gcagtgggcc gccctccttg ctggagggga cccggctcca ccacacacac atcgcgcccc
721tagagagcgc agccatctgg agcaaagaga aggataaaca gaaaggacac cctctctnnc
781caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
841ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
901tta

Download FASTA (ORF) (Full)