Construct: ORF ccsbBroad304_16148

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012504.1_s304c1, BRDN0000411229
Derived from:
ccsbBroadEn_16148
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPHA10 (284656)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_16148
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284656 EPHA10 EPH receptor A10 NM_173641.2 100% 100%
2 human 284656 EPHA10 EPH receptor A10 NM_001099439.2 29% 28% (many diffs)
3 mouse 230735 Epha10 Eph receptor A10 NM_177671.5 87.8% 92.8% (many diffs)
4 mouse 230735 Epha10 Eph receptor A10 XM_006503028.3 42.5% 43% (many diffs)
5 mouse 230735 Epha10 Eph receptor A10 XR_376312.1 39.3% (many diffs)
6 mouse 230735 Epha10 Eph receptor A10 XM_006503027.1 39.1% 39.6% (many diffs)
7 mouse 230735 Epha10 Eph receptor A10 XR_867853.1 36.3% (many diffs)
8 mouse 230735 Epha10 Eph receptor A10 XR_001784129.1 31.8% (many diffs)
9 mouse 230735 Epha10 Eph receptor A10 XR_001784128.1 26.6% (many diffs)
10 mouse 230735 Epha10 Eph receptor A10 NM_001256432.1 26% 26.4% (many diffs)
11 mouse 230735 Epha10 Eph receptor A10 XM_017320152.1 11% 10.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
951
ORF length:
885
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gacctgcgcc ggtccacacc cgctgcgcct cttcctctgc cggatgcagc
121tctgtctcgc gctgcttttg ggaccctggc ggcctgggac cgccgaggaa gttatcctcc
181tggattccaa agcctcccag gccgagctgg gctggactgc actgccaagt aatgggtggg
241aggagatcag cggcgtggat gaacacgacc gtcccatccg cacgtaccaa gtgtgcaatg
301tgctggagcc caaccaggac aactggctgc agactggctg gataagccgt ggccgcgggc
361agcgcatctt cgtggaactg cagttcacac tccgtgactg cagcagcatc cctggcgccg
421cgggtacctg caaggagacc ttcaacgtct actacctgga aactgaggcc gacctgggcc
481gtgggcgtcc ccgcctaggc ggcagccggc cccgcaaaat cgacacgatc gcggcggacg
541agagcttcac gcagggcgac ctgggtgagc gcaagatgaa gctgaacaca gaggtgcgcg
601agatcggacc gctcagccgg cggggtttcc acctggcctt tcaggacgtg ggcgcatgcg
661tggcgcttgt ctcggtgcgc gtctactaca agcagtgccg cgccaccgtg cggggcctgg
721ccacgttccc agccaccgca gccgagagcg ccttctccac actggtggaa gtggccggaa
781cgtgcgtggc gcactcggaa ggggagcctg gcagcccccc acgcatgcac tgcggcgccg
841acggcgagtg gctggtgcct gtgggccgct gcagctgcag cgcgggattc caggagcgtg
901gtgacttctg cgaaggtatc cagttggctg ggggccgtgg ggtgggagtg tnnccaactt
961tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1021agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)