Construct: ORF ccsbBroadEn_00022
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009676.1_s300c1, BRDN0000384972
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACYP2 (98)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 98 | ACYP2 | acylphosphatase 2 | NM_138448.4 | 100% | 100% | |
| 2 | human | 98 | ACYP2 | acylphosphatase 2 | NM_001320588.2 | 75.7% | 75.7% | 0_1ins72 |
| 3 | human | 98 | ACYP2 | acylphosphatase 2 | NM_001320589.2 | 67.4% | 64.6% | (many diffs) |
| 4 | human | 98 | ACYP2 | acylphosphatase 2 | NM_001320590.2 | 65.3% | 62.6% | (many diffs) |
| 5 | human | 98 | ACYP2 | acylphosphatase 2 | NM_001320587.2 | 64.9% | 60.2% | (many diffs) |
| 6 | human | 98 | ACYP2 | acylphosphatase 2 | NM_001320586.2 | 49.3% | 46% | (many diffs) |
| 7 | human | 98 | ACYP2 | acylphosphatase 2 | XM_017005411.1 | 42.9% | 40% | (many diffs) |
| 8 | human | 98 | ACYP2 | acylphosphatase 2 | XM_017005410.1 | 40.9% | 28.7% | (many diffs) |
| 9 | human | 98 | ACYP2 | acylphosphatase 2 | XM_017005412.1 | 27.3% | 22.9% | (many diffs) |
| 10 | human | 98 | ACYP2 | acylphosphatase 2 | XM_017005413.1 | 25.2% | 22.1% | (many diffs) |
| 11 | human | 98 | ACYP2 | acylphosphatase 2 | XR_001739083.1 | 16.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 363
- ORF length:
- 297
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TACCGCCCAG TCACTCAAAT CCGTGGACTA CGAGGTGTTC GGAAGAGTGC 121 AGGGTGTTTG CTTCAGAATG TATACAGAAG ATGAAGCTAG GAAAATAGGA GTGGTTGGCT 181 GGGTGAAGAA TACCAGCAAA GGCACCGTGA CAGGCCAAGT GCAGGGGCCA GAAGACAAAG 241 TCAATTCCAT GAAGTCCTGG CTGAGCAAGG TTGGAAGCCC TAGTTCTCGC ATTGACCGCA 301 CAAACTTTTC TAATGAAAAA ACCATCTCTA AGCTTGAATA CTCTAATTTT AGTATTAGAT 361 ACTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 421 gcaacgaac