Construct: ORF ccsbBroadEn_00181
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013398.1_s300c1, BRDN0000385957
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1QB (713)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 713 | C1QB | complement C1q B chain | NM_000491.5 | 100% | 100% | |
| 2 | human | 713 | C1QB | complement C1q B chain | NM_001371184.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 825
- ORF length:
- 759
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GATGAAGATC CCATGGGGCA GCATCCCAGT ACTGATGTTG CTCCTGCTCC 121 TGGGCCTAAT CGATATCTCC CAGGCCCAGC TCAGCTGCAC CGGGCCCCCA GCCATCCCTG 181 GCATCCCGGG TATCCCTGGG ACACCTGGCC CCGATGGCCA ACCTGGGACC CCAGGGATAA 241 AAGGAGAGAA AGGGCTTCCA GGGCTGGCTG GAGACCATGG TGAGTTCGGA GAGAAGGGAG 301 ACCCAGGGAT TCCTGGGAAT CCAGGAAAAG TCGGCCCCAA GGGCCCCATG GGCCCTAAAG 361 GTGGCCCAGG GGCCCCTGGA GCCCCAGGCC CCAAAGGTGA ATCGGGAGAC TACAAGGCCA 421 CCCAGAAAAT CGCCTTCTCT GCCACAAGAA CCATCAACGT CCCCCTGCGC CGGGACCAGA 481 CCATCCGCTT CGACCACGTG ATCACCAACA TGAACAACAA TTATGAGCCC CGCAGTGGCA 541 AGTTCACCTG CAAGGTGCCC GGTCTCTACT ACTTCACCTA CCACGCCAGC TCTCGAGGGA 601 ACCTGTGCGT GAACCTCATG CGTGGCCGGG AGCGTGCACA GAAGGTGGTC ACCTTCTGTG 661 ACTATGCCTA CAACACCTTC CAGGTCACCA CCGGTGGCAT GGTCCTCAAG CTGGAGCAGG 721 GGGAGAACGT CTTCCTGCAG GCCACCGACA AGAACTCACT ACTGGGCATG GAGGGTGCCA 781 ACAGCATCTT TTCCGGGTTC CTGCTCTTTC CAGATATGGA GGCCTGCCCA ACTTTCTTGT 841 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c