Construct: ORF ccsbBroadEn_00189
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011559.1_s300c1, BRDN0000390751
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C7 (730)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 730 | C7 | complement C7 | NM_000587.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2595
- ORF length:
- 2529
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGTGATAAGC TTATTCATTT TGGTGGGATT TATAGGAGAG TTCCAAAGTT 121 TTTCAAGTGC CTCCTCTCCA GTCAACTGCC AGTGGGACTT CTATGCCCCT TGGTCAGAAT 181 GCAATGGCTG TACCAAGACT CAGACTCGCA GGCGGTCAGT TGCTGTGTAT GGGCAGTATG 241 GAGGCCAGCC TTGTGTTGGA AATGCTTTTG AAACACAGTC CTGTGAACCT ACAAGAGGAT 301 GTCCAACAGA GGAGGGATGT GGAGAGCGTT TCAGGTGCTT TTCAGGTCAG TGCATCAGCA 361 AATCATTGGT TTGCAATGGG GATTCTGACT GTGATGAAGA CAGTGCTGAT GAAGACAGAT 421 GTGAGGACTC AGAAAGGAGA CCTTCCTGTG ATATCGATAA ACCTCCTCCT AACATAGAAC 481 TTACTGGAAA TGGTTACAAT GAACTCACTG GCCAGTTTAG GAACAGAGTC ATCAATACCA 541 AAAGTTTTGG TGGTCAATGT AGAAAGGTGT TTAGTGGGGA TGGAAAAGAT TTCTACAGGC 601 TGAGTGGAAA TGTCCTGTCC TATACATTCC AGGTGAAAAT AAATAATGAT TTTAATTATG 661 AATTTTACAA TAGTACTTGG TCTTATGTAA AACATACGTC GACAGAACAC ACATCATCTA 721 GTCGGAAGCG CTCCTTTTTT AGATCTTCAT CATCTTCTTC ACGCAGTTAT ACTTCACATA 781 CCAATGAAAT CCATAAAGGA AAGAGTTACC AACTGCTGGT TGTTGAGAAC ACTGTTGAAG 841 TGGCTCAGTT CATTAATAAC AATCCAGAAT TTTTACAACT TGCTGAGCCA TTCTGGAAGG 901 AGCTTTCCCA CCTCCCCTCT CTGTATGACT ACAGTGCCTA CCGAAGATTA ATCGACCAGT 961 ACGGGACACA TTATCTGCAA TCTGGGTCGT TAGGAGGAGA ATACAGAGTT CTATTTTATG 1021 TGGACTCAGA AAAATTAAAA CAAAATGATT TTAATTCAGT CGAAGAAAAG AAATGTAAAT 1081 CCTCAGGTTG GCATTTTGTC GTTAAATTTT CAAGTCATGG ATGCAAGGAA CTGGAAAACG 1141 CTTTAAAAGC TGCTTCAGGA ACCCAGAACA ATGTATTGCG AGGAGAACCG TTCATCAGAG 1201 GGGGAGGTGC AGGCTTCATA TCTGGCCTTA GTTACCTAGA GCTGGACAAT CCTGCTGGAA 1261 ACAAAAGGCG ATATTCTGCC TGGGCAGAAT CTGTGACTAA TCTTCCTCAA GTCATAAAAC 1321 AAAAGCTGAC ACCTTTATAT GAGCTGGTAA AGGAAGTACC TTGTGCCTCT GTGAAAAAAC 1381 TATACCTGAA ATGGGCTCTT GAAGAGTATC TGGATGAATT TGACCCCTGT CATTGCCGGC 1441 CTTGTCAAAA TGGTGGTTTG GCTACTGTTG AGGGGACCCA TTGTCTGTGC CATTGCAAAC 1501 CGTACACATT TGGTGCGGCG TGTGAGCAAG GAGTCCTCGT AGGGAATCAA GCAGGAGGGG 1561 TTGATGGAGG TTGGAGTTGC TGGTCCTCTT GGAGCCCCTG TGTCCAAGGG AAGAAAACAA 1621 GAAGCCGTGA ATGCAATAAC CCACCTCCCA GTGGGGGTGG GAGATCCTGC GTTGGAGAAA 1681 CGACAGAAAG CACACAATGC GAAGATGAGG AGCTGGAGCA CTTGAGGTTG CTTGAACCAC 1741 ATTGCTTTCC TTTGTCTTTG GTTCCAACAG AATTCTGTCC ATCACCTCCT GCCTTGAAAG 1801 ATGGATTTGT TCAAGATGAA GGTACAATGT TTCCTGTGGG GAAAAATGTA GTGTACACTT 1861 GCAATGAAGG ATACTCTCTT ATTGGAAACC CAGTGGCCAG ATGTGGAGAA GATTTACGGT 1921 GGCTTGTTGG GGAAATGCAT TGTCAGAAAA TTGCCTGTGT TCTACCTGTA CTGATGGATG 1981 GCATACAGAG TCACCCCCAA AAACCTTTCT ACACAGTTGG TGAGAAGGTG ACTGTTTCCT 2041 GTTCAGGTGG CATGTCCTTA GAAGGTCCTT CAGCATTTCT CTGTGGCTCC AGCCTTAAGT 2101 GGAGTCCTGA GATGAAGAAT GCCCGCTGTG TACAAAAAGA AAATCCGTTA ACACAGGCAG 2161 TGCCTAAATG TCAGCGCTGG GAGAAACTGC AGAATTCAAG ATGTGTTTGT AAAATGCCCT 2221 ACGAATGTGG ACCTTCCTTG GATGTATGTG CTCAAGATGA GAGAAGCAAA AGGATACTGC 2281 CTCTGACAGT TTGCAAGATG CATGTTCTCC ACTGTCAGGG TAGAAATTAC ACCCTTACTG 2341 GTAGGGACAG CTGTACTCTG CCTGCCTCAG CTGAGAAAGC TTGTGGTGCC TGCCCACTGT 2401 GGGGAAAATG TGATGCTGAG AGCAGCAAAT GTGTCTGCCG AGAAGCATCG GAGTGCGAGG 2461 AAGAAGGGTT TAGCATTTGT GTGGAAGTGA ACGGCAAGGA GCAGACGATG TCTGAGTGTG 2521 AGGCGGGCGC TCTGAGATGC AGAGGGCAGA GCATCTCTGT CACCAGCATA AGGCCTTGTG 2581 CTGCGGAAAC CCAGTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2641 tatcaatttg ttgcaacgaa c