Construct: ORF ccsbBroadEn_00247
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014693.1_s300c1, BRDN0000392689
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD5L (922)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 922 | CD5L | CD5 molecule like | NM_005894.3 | 100% | 100% | |
| 2 | human | 922 | CD5L | CD5 molecule like | NM_001347698.2 | 99.8% | 99.7% | 1040delT;1041_1042insA |
| 3 | human | 922 | CD5L | CD5 molecule like | XM_017002806.1 | 98.2% | 98.3% | 1041_1059delinsA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1107
- ORF length:
- 1041
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCTGCTATTC TCCTTGATCC TTGCCATTTG CACCAGACCT GGATTCCTAG 121 CGTCTCCATC TGGAGTGCGG CTGGTGGGGG GCCTCCACCG CTGTGAAGGG CGGGTGGAGG 181 TGGAACAGAA AGGCCAGTGG GGCACCGTGT GTGATGACGG CTGGGACATT AAGGACGTGG 241 CTGTGTTGTG CCGGGAGCTG GGCTGTGGAG CTGCCAGCGG AACCCCTAGT GGTATTTTGT 301 ATGAGCCACC AGCAGAAAAA GAGCAAAAGG TCCTCATCCA ATCAGTCAGT TGCACAGGAA 361 CAGAAGATAC ATTGGCTCAG TGTGAGCAAG AAGAAGTTTA TGATTGTTCA CATGATGAAG 421 ATGCTGGGGC ATCGTGTGAG AACCCAGAGA GCTCTTTCTC CCCAGTCCCA GAGGGTGTCA 481 GGCTGGCTGA CGGCCCTGGG CATTGCAAGG GACGCGTGGA AGTGAAGCAC CAGAACCAGT 541 GGTATACCGT GTGCCAGACA GGCTGGAGCC TCCGGGCCGC AAAGGTGGTG TGCCGGCAGC 601 TGGGATGTGG GAGGGCTGTA CTGACTCAAA AACGCTGCAA CAAGCATGCC TATGGCCGAA 661 AACCCATCTG GCTGAGCCAG ATGTCATGCT CAGGACGAGA AGCAACCCTT CAGGATTGCC 721 CTTCTGGGCC TTGGGGGAAG AACACCTGCA ACCATGATGA AGACACGTGG GTCGAATGTG 781 AAGATCCCTT TGACTTGAGA CTAGTAGGAG GAGACAACCT CTGCTCTGGG CGACTGGAGG 841 TGCTGCACAA GGGCGTATGG GGCTCTGTCT GTGATGACAA CTGGGGAGAA AAGGAGGACC 901 AGGTGGTATG CAAGCAACTG GGCTGTGGGA AGTCCCTCTC TCCCTCCTTC AGAGACCGGA 961 AATGCTATGG CCCTGGGGTT GGCCGCATCT GGCTGGATAA TGTTCGTTGC TCAGGGGAGG 1021 AGCAGTCCCT GGAGCAGTGC CAGCACAGAT TTTGGGGGTT TCACGACTGC ACCCACCAGG 1081 AAGATGTGGC TGTCATCTGC TCAGGATACC CAACTTTCTT GTACAAAGTt ggcattataa 1141 gaaagcattg cttatcaatt tgttgcaacg aac