Construct: ORF ccsbBroadEn_00260
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001935.1_s300c1, BRDN0000388952
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD48 (962)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 962 | CD48 | CD48 molecule | NM_001778.4 | 99.8% | 100% | 448C>T |
| 2 | human | 962 | CD48 | CD48 molecule | NM_001256030.1 | 89.1% | 81.8% | (many diffs) |
| 3 | human | 962 | CD48 | CD48 molecule | XM_011510171.2 | 86.6% | 86.8% | 0_1ins96;352C>T |
| 4 | human | 962 | CD48 | CD48 molecule | XM_005245625.1 | 63.3% | 63.3% | 384_385ins267 |
| 5 | human | 962 | CD48 | CD48 molecule | XM_017002867.2 | 58.2% | 58.4% | 81_82ins303;145C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 795
- ORF length:
- 729
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTG CTCCAGAGGT TGGGATTCGT GTCTGGCTCT GGAATTGCTA CTGCTGCCTC 121 TGTCACTCCT GGTGACCAGC ATTCAAGGTC ACTTGGTACA TATGACCGTG GTCTCCGGCA 181 GCAACGTGAC TCTGAACATC TCTGAGAGCC TGCCTGAGAA CTACAAACAA CTAACCTGGT 241 TTTATACTTT CGACCAGAAG ATTGTAGAAT GGGATTCCAG AAAATCTAAG TACTTTGAAT 301 CCAAATTTAA AGGCAGGGTC AGACTTGATC CTCAGAGTGG CGCACTGTAC ATCTCTAAGG 361 TCCAGAAAGA GGACAACAGC ACCTACATCA TGAGGGTGTT GAAAAAGACT GGGAATGAGC 421 AAGAATGGAA GATCAAGCTG CAAGTGCTTG ACCCTGTACC CAAGCCTGTC ATCAAAATTG 481 AGAAGATAGA AGACATGGAT GACAACTGTT ATTTGAAACT GTCATGTGTG ATACCTGGCG 541 AGTCTGTAAA CTACACCTGG TATGGGGACA AAAGGCCCTT CCCAAAGGAG CTCCAGAACA 601 GTGTGCTTGA AACCACCCTT ATGCCACATA ATTACTCCAG GTGTTATACT TGCCAAGTCA 661 GCAATTCTGT GAGCAGCAAG AATGGCACGG TCTGCCTCAG TCCACCCTGT ACCCTGGCCC 721 GGTCCTTTGG AGTAGAATGG ATTGCAAGTT GGCTAGTGGT CACGGTGCCC ACCATTCTTG 781 GCCTGTTACT TACCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 841 tatcaatttg ttgcaacgaa c