Construct: ORF ccsbBroadEn_00341
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010194.1_s300c1, BRDN0000389488
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CNTFR (1271)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1271 | CNTFR | ciliary neurotrophic factor... | NM_001207011.1 | 100% | 100% | |
| 2 | human | 1271 | CNTFR | ciliary neurotrophic factor... | NM_001842.5 | 100% | 100% | |
| 3 | human | 1271 | CNTFR | ciliary neurotrophic factor... | NM_147164.3 | 100% | 100% | |
| 4 | human | 1271 | CNTFR | ciliary neurotrophic factor... | XM_017014263.1 | 100% | 100% | |
| 5 | human | 1271 | CNTFR | ciliary neurotrophic factor... | XM_017014264.1 | 100% | 100% | |
| 6 | human | 1271 | CNTFR | ciliary neurotrophic factor... | XM_017014265.1 | 100% | 100% | |
| 7 | human | 1271 | CNTFR | ciliary neurotrophic factor... | XM_017014260.1 | 84.7% | 84.7% | 1_201del |
| 8 | human | 1271 | CNTFR | ciliary neurotrophic factor... | XM_017014261.1 | 84.7% | 84.7% | 1_201del |
| 9 | human | 1271 | CNTFR | ciliary neurotrophic factor... | XM_017014262.1 | 84.7% | 84.7% | 1_201del |
| 10 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | NM_001136056.3 | 90.4% | 95.1% | (many diffs) |
| 11 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | NM_016673.2 | 90.4% | 95.1% | (many diffs) |
| 12 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_006537597.3 | 90.4% | 95.1% | (many diffs) |
| 13 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_006537598.2 | 90.4% | 95.1% | (many diffs) |
| 14 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_006537599.3 | 90.4% | 95.1% | (many diffs) |
| 15 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_011249916.2 | 90.4% | 95.1% | (many diffs) |
| 16 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_011249917.2 | 90.4% | 95.1% | (many diffs) |
| 17 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_017319941.1 | 90.4% | 95.1% | (many diffs) |
| 18 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_017319942.1 | 90.4% | 95.1% | (many diffs) |
| 19 | mouse | 12804 | Cntfr | ciliary neurotrophic factor... | XM_006537596.3 | 73.4% | 77.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1182
- ORF length:
- 1116
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TNGGCATGGC TGCTCCTGTC CCGTGGGCCT GCTGTGCTGT GCTTGCCGCC GCCGCCGCAG 121 TTGTCTACGC CCAGAGACAC AGTCCACAGG AGGCACCCCA TGTGCAGTAC GAGCGCCTGG 181 GCTCTGACGT GACACTGCCA TGTGGGACAG CAAACTGGGA TGCTGCGGTG ACGTGGCGGG 241 TAAATGGGAC AGACCTGGCC CCTGACCTGC TCAACGGCTC TCAGCTGGTG CTCCATGGCC 301 TGGAACTGGG CCACAGTGGC CTCTACGCCT GCTTCCACCG TGACTCCTGG CACCTGCGCC 361 ACCAAGTCCT GCTGCATGTG GGCTTGCCGC CGCGGGAGCC TGTGCTCAGC TGCCGCTCCA 421 ACACTTACCC CAAGGGCTTC TACTGCAGCT GGCATCTGCC CACCCCCACC TACATTCCCA 481 ACACCTTCAA TGTGACTGTG CTGCATGGCT CCAAAATTAT GGTCTGTGAG AAGGACCCAG 541 CCCTCAAGAA CCGCTGCCAC ATTCGCTACA TGCACCTGTT CTCCACCATC AAGTACAAGG 601 TCTCCATAAG TGTCAGCAAT GCCCTGGGCC ACAATGCCAC AGCTATCACC TTTGACGAGT 661 TCACCATTGT GAAGCCTGAT CCTCCAGAAA ATGTGGTAGC CCGGCCAGTG CCCAGCAACC 721 CTCGCCGGCT GGAGGTGACG TGGCAGACCC CCTCGACCTG GCCTGACCCT GAGTCTTTTC 781 CTCTCAAGTT CTTTCTGCGC TACCGACCCC TCATCCTGGA CCAGTGGCAG CATGTGGAGC 841 TGTCCGACGG CACAGCACAC ACCATCACAG ATGCCTACGC CGGGAAGGAG TACATTATCC 901 AGGTGGCAGC CAAGGACAAT GAGATTGGGA CATGGAGTGA CTGGAGCGTA GCCGCCCACG 961 CTACGCCCTG GACTGAGGAA CCGCGACACC TCACCACGGA GGCCCAGGCT GCGGAGACCA 1021 CGACCAGCAC CACCAGCTCC CTGGCACCCC CACCTACCAC GAAGATCTGT GACCCTGGGG 1081 AGCTGGGCAG CGGCGGGGGA CCCTCGGCAC CCTTCTTGGT CAGCGTCCCC ATCACTCTGG 1141 CCCTGGCTGC CGCTGCCGCC ACTGCCAGCA GTCTCTTGAT CTGCCCAACT TTCTTGTACA 1201 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac