Construct: ORF ccsbBroadEn_00477
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017774.1_s300c1, BRDN0000389429
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LPAR1 (1902)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351397.2 | 100% | 100% | |
| 2 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351398.2 | 100% | 100% | |
| 3 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351399.2 | 100% | 100% | |
| 4 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351400.2 | 100% | 100% | |
| 5 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351401.2 | 100% | 100% | |
| 6 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351402.2 | 100% | 100% | |
| 7 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351403.2 | 100% | 100% | |
| 8 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351404.2 | 100% | 100% | |
| 9 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351405.2 | 100% | 100% | |
| 10 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351406.2 | 100% | 100% | |
| 11 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351407.2 | 100% | 100% | |
| 12 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351408.2 | 100% | 100% | |
| 13 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351409.2 | 100% | 100% | |
| 14 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351410.2 | 100% | 100% | |
| 15 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351411.2 | 100% | 100% | |
| 16 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351412.2 | 100% | 100% | |
| 17 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351413.2 | 100% | 100% | |
| 18 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351414.2 | 100% | 100% | |
| 19 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351415.2 | 100% | 100% | |
| 20 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351416.2 | 100% | 100% | |
| 21 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351417.2 | 100% | 100% | |
| 22 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351418.2 | 100% | 100% | |
| 23 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351419.1 | 100% | 100% | |
| 24 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351420.1 | 100% | 100% | |
| 25 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001401.5 | 100% | 100% | |
| 26 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_057159.4 | 100% | 100% | |
| 27 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | XM_005251782.3 | 100% | 100% | |
| 28 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | XM_017014404.2 | 100% | 100% | |
| 29 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | NM_010336.2 | 90.4% | 97.2% | (many diffs) |
| 30 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | NM_172989.1 | 90.4% | 97.2% | (many diffs) |
| 31 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249928.2 | 90.4% | 97.2% | (many diffs) |
| 32 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249929.2 | 90.4% | 97.2% | (many diffs) |
| 33 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249930.2 | 90.4% | 97.2% | (many diffs) |
| 34 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249931.2 | 90.4% | 97.2% | (many diffs) |
| 35 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249932.2 | 90.4% | 97.2% | (many diffs) |
| 36 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249933.2 | 90.4% | 97.2% | (many diffs) |
| 37 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249934.2 | 90.4% | 97.2% | (many diffs) |
| 38 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249935.2 | 90.4% | 97.2% | (many diffs) |
| 39 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | NM_001290486.1 | 85.9% | 92.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1158
- ORF length:
- 1092
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGCCATCTCT ACTTCCATCC CTGTAATTTC ACAGCCCCAG TTCACAGCCA 121 TGAATGAACC ACAGTGCTTC TACAACGAGT CCATTGCCTT CTTTTATAAC CGAAGTGGAA 181 AGCATCTTGC CACAGAATGG AACACAGTCA GCAAGCTGGT GATGGGACTT GGAATCACTG 241 TTTGTATCTT CATCATGTTG GCCAACCTAT TGGTCATGGT GGCAATCTAT GTCAACCGCC 301 GCTTCCATTT TCCTATTTAT TACCTAATGG CTAATCTGGC TGCTGCAGAC TTCTTTGCTG 361 GGTTGGCCTA CTTCTATCTC ATGTTCAACA CAGGACCCAA TACTCGGAGA CTGACTGTTA 421 GCACATGGCT CCTTCGTCAG GGCCTCATTG ACACCAGCCT GACGGCATCT GTGGCCAACT 481 TACTGGCTAT TGCAATCGAG AGGCACATTA CGGTTTTCCG CATGCAGCTC CACACACGGA 541 TGAGCAACCG GCGGGTAGTG GTGGTCATTG TGGTCATCTG GACTATGGCC ATCGTTATGG 601 GTGCTATACC CAGTGTGGGC TGGAACTGTA TCTGTGATAT TGAAAATTGT TCCAACATGG 661 CACCCCTCTA CAGTGACTCT TACTTAGTCT TCTGGGCCAT TTTCAACTTG GTGACCTTTG 721 TGGTAATGGT GGTTCTCTAT GCTCACATCT TTGGCTATGT TCGCCAGAGG ACTATGAGAA 781 TGTCTCGGCA TAGTTCTGGA CCCCGGCGGA ATCGGGATAC CATGATGAGT CTTCTGAAGA 841 CTGTGGTCAT TGTGCTTGGG GCCTTTATCA TCTGCTGGAC TCCTGGATTG GTTTTGTTAC 901 TTCTAGACGT GTGCTGTCCA CAGTGCGACG TGCTGGCCTA TGAGAAATTC TTCCTTCTCC 961 TTGCTGAATT CAACTCTGCC ATGAACCCCA TCATTTACTC CTACCGCGAC AAAGAAATGA 1021 GCGCCACCTT TAGGCAGATC CTCTGCTGCC AGCGCAGTGA GAACCCCACC GGCCCCACAG 1081 AAGGCTCAGA CCGCTCGGCT TCCTCCCTCA ACCACACCAT CTTGGCTGGA GTTCACAGCA 1141 ATGACCACTC TGTGGTTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1201 gcttatcaat ttgttgcaac gaac