Construct: ORF ccsbBroadEn_00484

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010215.1_s300c1, BRDN0000455598
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EFNA5 (1946)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1946 EFNA5 ephrin A5 NM_001962.3 100% 100%
2 human 1946 EFNA5 ephrin A5 XM_006714565.3 88.1% 88.1% 484_485ins81
3 human 1946 EFNA5 ephrin A5 XM_011543250.3 87.7% 82.6% (many diffs)
4 human 1946 EFNA5 ephrin A5 XM_011543251.2 64.9% 64.9% 0_1ins240
5 human 1946 EFNA5 ephrin A5 XM_017009205.1 64.9% 64.9% 0_1ins240
6 mouse 13640 Efna5 ephrin A5 NM_207654.2 96.6% 99.1% (many diffs)
7 mouse 13640 Efna5 ephrin A5 NM_010109.3 84.7% 87.2% (many diffs)
8 mouse 13640 Efna5 ephrin A5 XM_006523598.3 63% 64.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
753
ORF length:
684
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTGCACGTG GAGATGTTGA CGCTGGTGTT TCTGGTGCTC TGGATGTGTG
121TGTTCAGCCA GGACCCGGGC TCCAAGGCCG TCGCCGACCG CTACGCTGTC TACTGGAACA
181GCAGCAACCC CAGATTCCAG AGGGGTGACT ACCATATTGA TGTCTGTATC AATGACTACC
241TGGATGTTTT CTGCCCTCAC TATGAGGACT CCGTCCCAGA AGATAAGACT GAGCGCTATG
301TCCTCTACAT GGTGAACTTT GATGGCTACA GTGCCTGCGA CCACACTTCC AAAGGGTTCA
361AGAGATGGGA ATGTAACCGG CCTCACTCTC CAAATGGACC GCTGAAGTTC TCTGAAAAAT
421TCCAGCTCTT CACTCCCTTT TCTCTAGGAT TTGAATTCAG GCCAGGCCGA GAATATTTCT
481ACATCTCCTC TGCAATCCCA GATAATGGAA GAAGGTCCTG TCTAAAGCTC AAAGTCTTTG
541TGAGACCAAC AAATAGCTGT ATGAAAACTA TAGGTGTTCA TGATCGTGTT TTCGATGTTA
601ACGACAAAGT AGAAAATTCA TTAGAACCAG CAGATGACAC CGTACATGAG TCAGCCGAGC
661CATCCCGCGG CGAGAACGCG GCACAAACAC CAAGGATACC CAGCCGCCTT TTGGCAATCC
721TACTGTTCCT CCTGGCGATG CTTTTGACAT TATTGCCAAC TTTCTTGTAC AAAGTTGGca
781ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)