Construct: ORF ccsbBroadEn_00534
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008898.1_s300c1, BRDN0000385016
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FABP1 (2168)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2168 | FABP1 | fatty acid binding protein 1 | NM_001443.3 | 100% | 100% | |
| 2 | mouse | 14080 | Fabp1 | fatty acid binding protein ... | NM_017399.4 | 85.9% | 84.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 447
- ORF length:
- 381
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TTTCTCCGGC AAGTACCAAC TGCAGAGCCA GGAAAACTTT GAAGCCTTCA 121 TGAAGGCAAT CGGTCTGCCG GAAGAGCTCA TCCAGAAGGG GAAGGATATC AAGGGGGTGT 181 CGGAAATCGT GCAGAATGGG AAGCACTTCA AGTTCACCAT CACCGCTGGG TCCAAAGTGA 241 TCCAAAACGA ATTCACGGTG GGGGAGGAAT GTGAGCTGGA GACAATGACA GGGGAGAAAG 301 TCAAGACAGT GGTTCAGTTG GAAGGTGACA ATAAACTGGT GACAACTTTC AAAAACATCA 361 AGTCTGTGAC CGAACTCAAC GGCGACATAA TCACCAATAC CATGACATTG GGTGACATTG 421 TCTTCAAGAG AATCAGCAAG AGAATTTACT CAACTTTCTT GTACAAAGTt ggcattataa 481 gaaagcattg cttatcaatt tgttgcaacg aac