Construct: ORF ccsbBroadEn_00538

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014459.1_s300c1, BRDN0000457277
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FANCB (2187)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2187 FANCB FA complementation group B NM_001018113.3 100% 100%
2 human 2187 FANCB FA complementation group B NM_001324162.1 100% 100%
3 human 2187 FANCB FA complementation group B NM_152633.3 100% 100%
4 human 2187 FANCB FA complementation group B XM_017029355.2 100% 100%
5 human 2187 FANCB FA complementation group B XM_017029356.1 96.5% 96.5% (many diffs)
6 human 2187 FANCB FA complementation group B XM_011545470.2 90.9% 89.6% (many diffs)
7 human 2187 FANCB FA complementation group B XR_001755674.1 54.6% (many diffs)
8 human 2187 FANCB FA complementation group B XR_001755673.1 53.5% (many diffs)
9 human 2187 FANCB FA complementation group B XR_001755672.1 51.3% (many diffs)
10 human 2187 FANCB FA complementation group B NR_136707.1 11.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2646
ORF length:
2577
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACTAGCAAA CAAGCAATGT CATCTAACGA ACAAGAAAGG CTCTTGTGTT
121ATAATGGGGA AGTCCTTGTT TTCCAGTTGT CTAAAGGAAA TTTTGCAGAT AAAGAGCCTA
181CAAAAACACC CATATTACAT GTCAGAAGAA TGGTATTTGA CAGAGGAACA AAAGTATTTG
241TTCAGAAGTC CACTGGATTT TTTACCATAA AGGAAGAAAA CTCTCATTTA AAAATCATGT
301GTTGCAACTG TGTGTCAGAT TTCAGAACTG GAATTAACCT CCCTTACATT GTGATAGAAA
361AAAATAAAAA GAATAATGTT TTTGAATATT TTTTACTAAT CCTTCACAGT ACTAATAAAT
421TTGAAATGCG TTTGAGTTTT AAACTAGGCT ATGAGATGAA GGATGGCCTA AGGGTCCTTA
481ATGGCCCTTT AATTTTATGG AGGCATGTCA AAGCATTCTT CTTTATCTCT TCTCAAACTG
541GCAAAGTTGT TAGTGTGTCA GGTAACTTTT CCTCTATTCA GTGGGCAGGG GAGATTGAAA
601ATTTAGGTAT GGTTTTATTG GGACTAAAGG AATGTTGTTT ATCTGAGGAA GAATGTACTC
661AAGAGCCTTC AAAATCAGAT TATGCAATTT GGAATACCAA ATTTTGTGTA TATTCTCTTG
721AAAGTCAAGA AGTATTAAGT GATATATACA TTATTCCTCC TGCTTACAGC AGTGTGGTGA
781CTTATGTACA TATTTGTGCA ACTGAGATCA TCAAAAACCA GTTAAGAATA TCTCTCATTG
841CCCTTACTCG AAAGAATCAG CTGATTTCAT TTCAGAATGG AACTCCTAAA AATGTGTGCC
901AGCTTCCATT TGGAGATCCT TGTGCAGTTC AACTTATGGA TTCAGGTGGA GGAAACCTCT
961TTTTCGTTGT ATCCTTTATA TCCAATAATG CTTGTGCTGT ATGGAAAGAG AGCTTTCAGG
1021TTGCTGCTAA ATGGGAAAAA CTTAGCTTAG TACTGATAGA TGACTTTATT GGAAGTGGAA
1081CTGAACAAGT ACTCCTACTT TTTAAGGACT CCTTGAACTC AGACTGCCTG ACTTCATTTA
1141AAATAACGGA TCTTGGAAAA ATAAACTATT CGAGTGAACC ATCAGATTGC AATGAAGATG
1201ACTTATTTGA AGACAAACAA GAGAATCGTT ACCTGGTGGT TCCACCTCTA GAAACAGGAC
1261TGAAAGTTTG TTTTTCTTCT TTTCGGGAAT TACGGCAGCA TCTGTTGCTT AAGGAAAAAA
1321TTATTTCAAA ATCTTACAAA GCTTTAATAA ACCTAGTTCA AGGAAAAGAT GATAATACGT
1381CAAGTGCAGA GGAGAAGGAA TGTCTTGTTC CTCTTTGTGG TGAAGAAGAA AATTCTGTCC
1441ATATCTTAGA TGAAAAGTTA TCAGACAATT TTCAAGATTC AGAACAGCTA GTAGAGAAGA
1501TATGGTATCG TGTAATAGAT GATAGCTTGG TTGTTGGAGT GAAAACTACA TCTTCTTTGA
1561AGCTGTCCCT GAATGATGTG ACTTTATCAT TGTTAATGGA TCAAGCCCAT GACTCCAGAT
1621TTCGGCTTCT AAAGTGTCAA AATAGGGTGA TTAAGTTGAG TACAAATCCT TTCCCAGCAC
1681CATACTTGAT GCCATGTGAA ATAGGATTGG AAGCAAAAAG GGTCACGTTG ACCCCTGATA
1741GCAAGAAAGA GGAAAGCTTT GTTTGTGAAC ACCCATCTAA GAAAGAGTGT GTACAGATAA
1801TTACTGCTGT AACATCTCTT TCACCACTTT TAACATTCAG TAAATTTTGT TGCACTGTAC
1861TGCTACAAAT TATGGAGAGA GAAAGTGGTA ACTGTCCTAA AGATCGTTAT GTTGTGTGTG
1921GCAGAGTTTT TTTAAGTCTA GAAGATCTTT CAACTGGGAA GTACCTACTG ACATTTCCAA
1981AGAAGAAACC TATAGAGCAC ATGGAAGATC TTTTTGCACT TCTTGCAGCA TTCCATAAAT
2041CTTGTTTTCA AATCACATCA CCCGGCTATG CCCTGAATTC AATGAAGGTG TGGCTCTTAG
2101AACATATGAA ATGTGAAATA ATCAAAGAAT TTCCAGAAGT GTACTTTTGT GAAAGACCGG
2161GAAGTTTCTA TGGGACACTC TTCACTTGGA AACAGAGAAC ACCATTCGAA GGGATTTTAA
2221TAATCTATTC CAGGAATCAA ACAGTTATGT TCCAGTGCCT TCATAATCTC ATCAGAATTC
2281TCCCTATAAA CTGTTTCCTC AAAAATCTAA AATCAGGAAG TGAGAATTTC CTAATTGATA
2341ATATGGCATT TACTTTGGAG AAGGAACTAG TCACCCTTAG TTCTCTTTCT TCTGCCATAG
2401CTAAACATGA AAGCAATTTT ATGCAGAGGT GTGAAGTGAG CAAAGGAAAG AGTAGTGTCG
2461TCGCGGCTGC TTTATCAGAC AGAAGGGAAA ATATCCATCC CTACAGAAAA GAACTTCAGA
2521GAGAAAAGAA GAAAATGTTG CAAACGAACC TAAAAGTGAG TGGTGCCCTT TACAGAGAAA
2581TAACTTTGAA AGTAGCTGAG GTTCAGTTGA AATCAGACTT TGCTGCACAG AAACTGAGTA
2641ATTTATTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt
2701gttgcaacga ac

Download FASTA (ORF) (Full)