Construct: ORF ccsbBroadEn_00578

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000998.1_s300c1, BRDN0000389261
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FLI1 (2313)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... NM_002017.5 100% 100%
2 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... NM_001167681.2 92.6% 92.6% 0_1ins99
3 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... XM_011542701.2 92.6% 92.6% 0_1ins99
4 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... XM_017017405.1 92.6% 92.6% 0_1ins99
5 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... XM_017017406.1 92.6% 92.6% 0_1ins99
6 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... XM_011542702.1 90.7% 90.7% 653_654ins126
7 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... NM_001271010.1 84.5% 82.5% (many diffs)
8 human 2313 FLI1 Fli-1 proto-oncogene, ETS t... NM_001271012.1 56.8% 56.4% (many diffs)
9 mouse 14247 Fli1 Friend leukemia integration 1 NM_008026.5 90.9% 96.6% (many diffs)
10 mouse 14247 Fli1 Friend leukemia integration 1 XM_006510008.2 84.2% 89.3% (many diffs)
11 mouse 14247 Fli1 Friend leukemia integration 1 XM_006510009.2 84.2% 89.3% (many diffs)
12 mouse 14247 Fli1 Friend leukemia integration 1 XM_017313133.1 84.2% 89.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1422
ORF length:
1356
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CGGGACTATT AAGGAGGCTC TGTCGGTGGT GAGCGACGAC CAGTCCCTCT
121TTGACTCAGC GTACGGAGCG GCAGCCCATC TCCCCAAGGC CGACATGACT GCCTCGGGGA
181GTCCTGACTA CGGGCAGCCC CACAAGATCA ACCCCCTCCC ACCACAGCAG GAGTGGATCA
241ATCAGCCAGT GAGGGTCAAC GTCAAGCGGG AGTATGACCA CATGAATGGA TCCAGGGAGT
301CTCCGGTGGA CTGCAGCGTT AGCAAATGCA GCAAGCTGGT GGGCGGAGGC GAGTCCAACC
361CCATGAACTA CAACAGCTAT ATGGACGAGA AGAATGGCCC CCCTCCTCCC AACATGACCA
421CCAACGAGAG GAGAGTCATC GTCCCCGCAG ACCCCACACT GTGGACACAG GAGCATGTGA
481GGCAATGGCT GGAGTGGGCC ATAAAGGAGT ACAGCTTGAT GGAGATCGAC ACATCCTTTT
541TCCAGAACAT GGATGGCAAG GAACTGTGTA AAATGAACAA GGAGGACTTC CTCCGCGCCA
601CCACCCTCTA CAACACGGAA GTGCTGTTGT CACACCTCAG TTACCTCAGG GAAAGTTCAC
661TGCTGGCCTA TAATACAACC TCCCACACCG ACCAATCCTC ACGATTGAGT GTCAAAGAAG
721ACCCTTCTTA TGACTCAGTC AGAAGAGGAG CTTGGGGCAA TAACATGAAT TCTGGCCTCA
781ACAAAAGTCC TCCCCTTGGA GGGGCACAAA CGATCAGTAA GAATACAGAG CAACGGCCCC
841AGCCAGATCC GTATCAGATC CTGGGCCCGA CCAGCAGTCG CCTAGCCAAC CCTGGAAGCG
901GGCAGATCCA GCTGTGGCAA TTCCTCCTGG AGCTGCTCTC CGACAGCGCC AACGCCAGCT
961GTATCACCTG GGAGGGGACC AACGGGGAGT TCAAAATGAC GGACCCCGAT GAGGTGGCCA
1021GGCGCTGGGG CGAGCGGAAA AGCAAGCCCA ACATGAATTA CGACAAGCTG AGCCGGGCCC
1081TCCGTTATTA CTATGATAAA AACATTATGA CCAAAGTGCA CGGCAAAAGA TATGCTTACA
1141AATTTGACTT CCACGGCATT GCCCAGGCTC TGCAGCCACA TCCGACCGAG TCGTCCATGT
1201ACAAGTACCC TTCTGACATC TCCTACATGC CTTCCTACCA TGCCCACCAG CAGAAGGTGA
1261ACTTTGTCCC TCCCCATCCA TCCTCCATGC CTGTCACTTC CTCCAGCTTC TTTGGAGCCG
1321CATCACAATA CTGGACCTCC CCCACGGGGG GAATCTACCC CAACCCCAAC GTCCCCCGCC
1381ATCCTAACAC CCACGTGCCT TCACACTTAG GCAGCTACTA CTACCCAACT TTCTTGTACA
1441AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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