Construct: ORF ccsbBroadEn_00623
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008056.1_s300c1, BRDN0000398573
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GCHFR (2644)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2644 | GCHFR | GTP cyclohydrolase I feedba... | NM_005258.3 | 100% | 100% | |
| 2 | mouse | 320415 | Gchfr | GTP cyclohydrolase I feedba... | NM_177157.4 | 91.6% | 92.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 321
- ORF length:
- 252
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCCTACCTG CTCATCAGCA CCCAGATCCG CATGGAGGTG GGCCCCACTA 121 TGGTGGGCGA TGAACAGTCG GATCCAGAGC TGATGCAGCA TCTGGGGGCT TCAAAGAGAA 181 GAGCCTTGGG AAACAACTTT TATGAATACT ACGTCGATGA CCCTCCCCGC ATAGTCCTGG 241 ACAAGCTGGA ACGCAGGGGC TTCCGTGTGC TGAGCATGAC GGGGGTGGGC CAGACGCTGG 301 TGTGGTGTCT GCACAAGGAG TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 361 attgcttatc aatttgttgc aacgaac