Construct: ORF ccsbBroadEn_00671
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017856.1_s300c1, BRDN0000390519
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XCR1 (2829)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | NM_001024644.2 | 100% | 100% | |
| 2 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | NM_005283.3 | 100% | 100% | |
| 3 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XM_017006196.1 | 100% | 100% | |
| 4 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XM_017006197.1 | 100% | 100% | |
| 5 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XM_017006198.1 | 100% | 100% | |
| 6 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XM_017006199.1 | 100% | 100% | |
| 7 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XM_017006200.1 | 100% | 100% | |
| 8 | human | 2829 | XCR1 | X-C motif chemokine receptor 1 | XM_017006201.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1065
- ORF length:
- 999
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GTCCTCAGGC AACCCAGAGA GCACCACCTT TTTTTACTAT GACCTTCAGA 121 GCCAGCCGTG TGAGAACCAG GCCTGGGTCT TTGCTACCCT CGCCACCACT GTCCTATACT 181 GCCTGGTGTT TCTCCTCAGC CTAGTGGGCA ACAGCCTGGT CCTGTGGGTC CTGGTGAAGT 241 ATGAGAGCCT GGAGTCCCTC ACCAACATCT TCATCCTCAA CCTGTGCCTC TCAGACCTGG 301 TGTTCGCCTG CTTGTTGCCT GTGTGGATCT CCCCATACCA CTGGGGCTGG GTGCTGGGAG 361 ACTTCCTCTG CAAACTCCTC AATATGATCT TCTCCATCAG CCTCTACAGC AGCATCTTCT 421 TCCTGACCAT CATGACCATC CACCGCTACC TGTCGGTAGT GAGCCCCCTC TCCACCCTGC 481 GCGTCCCCAC CCTCCGCTGC CGGGTGCTGG TGACCATGGC TGTGTGGGTA GCCAGCATCC 541 TGTCCTCCAT CCTCGACACC ATCTTCCACA AGGTGCTTTC TTCGGGCTGT GATTATTCCG 601 AACTCACGTG GTACCTCACC TCCGTCTACC AGCACAACCT CTTCTTCCTG CTGTCCCTGG 661 GGATTATCCT GTTCTGCTAC GTGGAGATCC TCAGGACCCT GTTCCGCTCA CGCTCCAAGC 721 GGCGCCACCG CACGGTCAAG CTCATCTTCG CCATCGTGGT GGCCTACTTC CTCAGCTGGG 781 GTCCCTACAA CTTCACCCTG TTTCTGCAGA CGCTGTTTCG GACCCAGATC ATCCGGAGCT 841 GCGAGGCCAA ACAGCAGCTA GAATACGCCC TGCTCATCTG CCGCAACCTC GCCTTCTCCC 901 ACTGCTGCTT TAACCCGGTG CTCTATGTCT TCGTGGGGGT CAAGTTCCGC ACACACCTGA 961 AACATGTTCT CCGGCAGTTC TGGTTCTGCC GGCTGCAGGC ACCCAGCCCA GCCTCGATCC 1021 CCCACTCCCC TGGTGCCTTC GCCTATGAGG GCGCCTCCTT CTACTGCCCA ACTTTCTTGT 1081 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c