Construct: ORF ccsbBroadEn_00721
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007775.1_s300c1, BRDN0000392916
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HABP2 (3026)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3026 | HABP2 | hyaluronan binding protein 2 | NM_004132.5 | 100% | 100% | |
| 2 | human | 3026 | HABP2 | hyaluronan binding protein 2 | NM_001177660.2 | 95.3% | 95.3% | 0_1ins78 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1746
- ORF length:
- 1680
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGTT TGCCAGGATG TCTGATCTCC ATGTTCTGCT GTTAATGGCT CTGGTGGGAA 121 AGACAGCCTG TGGGTTCTCC CTGATGTCTT TATTGGAAAG CCTGGACCCA GACTGGACCC 181 CTGACCAGTA TGATTACAGC TACGAGGATT ATAATCAGGA AGAGAACACC AGTAGCACAC 241 TTACCCACGC TGAGAATCCT GACTGGTACT ACACTGAGGA CCAAGCTGAT CCATGCCAGC 301 CCAACCCCTG TGAACACGGT GGGGACTGCC TCGTCCATGG GAGCACCTTC ACATGCAGCT 361 GCCTGGCTCC TTTCTCTGGG AATAAGTGTC AGAAAGTGCA AAATACGTGC AAGGACAACC 421 CATGTGGCCG GGGCCAATGT CTCATTACCC AGAGTCCTCC CTACTACCGC TGTGTCTGTA 481 AACACCCTTA CACAGGTCCC AGCTGCTCCC AAGTGGTTCC TGTATGCAGG CCAAACCCCT 541 GCCAGAATGG GGCTACCTGC TCCCGGCATA AGCGGAGATC CAAGTTCACC TGTGCCTGTC 601 CCGACCAGTT CAAGGGGAAA TTCTGTGAAA TAGGTTCTGA TGACTGCTAT GTTGGCGATG 661 GCTACTCTTA CCGAGGGAAA ATGAATAGGA CAGTCAACCA GCATGCGTGC CTTTACTGGA 721 ACTCCCACCT CCTCTTGCAG GAGAATTACA ACATGTTTAT GGAGGATGCT GAAACCCATG 781 GGATTGGGGA ACACAATTTC TGCAGAAACC CAGATGCGGA CGAAAAGCCC TGGTGCTTTA 841 TTAAAGTTAC CAATGACAAG GTGAAATGGG AATACTGTGA TGTCTCAGCC TGCTCAGCCC 901 AGGACGTTGC CTACCCAGAG GAAAGCCCCA CTGAGCCATC AACCAAGCTT CCGGGGTTTG 961 ACTCCTGTGG AAAGACTGAG ATAGCAGAGA GGAAGATCAA GAGAATCTAT GGAGGCTTTA 1021 AGAGCACGGC GGGCAAGCAC CCATGGCAGG CGTCCCTCCA GTCCTCGCTG CCTCTGACCA 1081 TCTCCATGCC CCAGGGCCAC TTCTGTGGTG GGGCGCTGAT CCACCCCTGC TGGGTGCTCA 1141 CTGCTGCCCA CTGCACCGAC ATAAAAACCA GACATCTAAA GGTGGTGCTA GGGGACCAGG 1201 ACCTGAAGAA AGAAGAATTT CATGAGCAGA GCTTTAGGGT GGAGAAGATA TTCAAGTACA 1261 GCCACTACAA TGAAAGAGAT GAGATTCCCC ACAATGATAT TGCATTGCTC AAGTTAAAGC 1321 CAGTGGATGG TCACTGTGCT CTAGAATCCA AATACGTGAA GACTGTGTGC TTGCCTGATG 1381 GGTCCTTTCC CTCTGGGAGT GAGTGCCACA TCTCTGGCTG GGGTGTTACA GAAACAGGAA 1441 AAGGGTCCCG CCAGCTCCTG GATGCCAAAG TCAAGCTGAT TGCCAACACT TTGTGCAACT 1501 CCCGCCAACT CTATGACCAC ATGATTGATG ACAGTATGAT CTGTGCAGGA AATCTTCAGA 1561 AACCTGGGCA AGACACCTGC CAGGGTGACT CTGGAGGCCC CCTGACCTGT GAGAAGGACG 1621 GCACCTACTA CGTCTATGGG ATAGTGAGCT GGGGCCTGGA GTGTGGGAAG AGGCCAGGGG 1681 TCTACACCCA AGTTACCAAA TTCCTGAATT GGATCAAAGC CACCATCAAA AGTGAAAGTG 1741 GCTTCTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1801 gttgcaacga ac