Construct: ORF ccsbBroadEn_00736
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006377.1_s300c1, BRDN0000397680
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NRG1 (3084)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3084 | NRG1 | neuregulin 1 | NM_013959.3 | 100% | 100% | |
| 2 | human | 3084 | NRG1 | neuregulin 1 | NM_001322207.2 | 59.6% | 59.4% | (many diffs) |
| 3 | human | 3084 | NRG1 | neuregulin 1 | NM_001322206.2 | 55.2% | 54.9% | (many diffs) |
| 4 | human | 3084 | NRG1 | neuregulin 1 | XM_005273487.3 | 42.5% | 40.9% | (many diffs) |
| 5 | human | 3084 | NRG1 | neuregulin 1 | XM_005273486.3 | 41.5% | 38.5% | (many diffs) |
| 6 | human | 3084 | NRG1 | neuregulin 1 | NM_001322205.2 | 41.2% | 41% | (many diffs) |
| 7 | mouse | 211323 | Nrg1 | neuregulin 1 | XM_017312637.1 | 48.5% | 47.8% | (many diffs) |
| 8 | mouse | 211323 | Nrg1 | neuregulin 1 | XM_017312636.1 | 37% | 35.6% | (many diffs) |
| 9 | mouse | 211323 | Nrg1 | neuregulin 1 | NM_178591.2 | 36.2% | 35.7% | (many diffs) |
| 10 | mouse | 211323 | Nrg1 | neuregulin 1 | XM_006509069.2 | 35% | 34.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 65
- ORF end:
- 953
- ORF length:
- 888
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAGT 61 TGGCATGGAG ATTTATTCCC CAGACATGTC TGAGGTCGCC GCCGAGAGGT CCTCCAGCCC 121 CTCCACTCAG CTGAGTGCAG ACCCATCTCT TGATGGGCTT CCGGCAGCAG AAGACATGCC 181 AGAGCCCCAG ACTGAAGATG GGAGAACCCC TGGACTCGTG GGCCTGGCCG TGCCCTGCTG 241 TGCGTGCCTA GAAGCTGAGC GCCTGAGAGG TTGCCTCAAC TCAGAGAAAA TCTGCATTGT 301 CCCCATCCTG GCTTGCCTGG TCAGCCTCTG CCTCTGCATC GCCGGCCTCA AGTGGGTATT 361 TGTGGACAAG ATCTTTGAAT ATGACTCTCC TACTCACCTT GACCCTGGGG GGTTAGGCCA 421 GGACCCTATT ATTTCTCTGG ACGCAACTGC TGCCTCAGCT GTGTGGGTGT CGTCTGAGGC 481 ATACACTTCA CCTGTCTCTA GGGCTCAATC TGAAAGTGAG GTTCAAGTTA CAGTGCAAGG 541 TGACAAGGCT GTTGTCTCCT TTGAACCATC AGCGGCACCG ACACCGAAGA ATCGTATTTT 601 TGCCTTTTCT TTCTTGCCGT CCACTGCGCC ATCCTTCCCT TCACCCACCC GGAACCCTGA 661 GGTGAGAACG CCCAAGTCAG CAACTCAGCC ACAAACAACA GAAACTAATC TCCAAACTGC 721 TCCTAAACTT TCTACATCTA CATCCACCAC TGGGACAAGC CATCTTGTAA AATGTGCGGA 781 GAAGGAGAAA ACTTTCTGTG TGAATGGAGG GGAGTGCTTC ATGGTGAAAG ACCTTTCAAA 841 CCCCTCGAGA TACTTGTGCA AGTGCCCAAA TGAGTTTACT GGTGATCGCT GCCAAAACTA 901 CGTAATGGCC AGCTTCTACA GTACGTCCAC TCCCTTTCTG TCTCTGCCTG AATACCCAAC 961 TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt gcaacgaac