Construct: ORF ccsbBroadEn_00757

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016343.1_s300c1, BRDN0000388623
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMGA1 (3159)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319077.2 100% 100%
2 human 3159 HMGA1 high mobility group AT-hook 1 NM_002131.4 100% 100%
3 human 3159 HMGA1 high mobility group AT-hook 1 NM_145902.3 100% 100%
4 human 3159 HMGA1 high mobility group AT-hook 1 NM_145903.3 100% 100%
5 human 3159 HMGA1 high mobility group AT-hook 1 NM_145905.2 100% 100%
6 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319080.2 90.2% 89.6% 103_133delinsA
7 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319078.2 89.7% 89.7% 102_134del
8 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319079.2 89.7% 89.7% 102_134del
9 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319081.2 89.7% 89.7% 102_134del
10 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319082.2 89.7% 89.7% 102_134del
11 human 3159 HMGA1 high mobility group AT-hook 1 NM_145899.3 89.7% 89.7% 102_134del
12 human 3159 HMGA1 high mobility group AT-hook 1 NM_145901.2 89.7% 89.7% 102_134del
13 mouse 111241 Hmga1-rs1 high mobility group AT-hook... NM_001166477.1 92% 96.8% (many diffs)
14 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166537.1 92% 96.8% (many diffs)
15 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166539.1 92% 96.8% (many diffs)
16 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166540.1 92% 96.8% (many diffs)
17 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166541.1 92% 96.8% (many diffs)
18 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166542.1 92% 96.8% (many diffs)
19 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001025427.3 82.5% 86.9% (many diffs)
20 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001039356.2 82.5% 86.9% (many diffs)
21 mouse 111241 Hmga1-rs1 high mobility group AT-hook... NM_001166476.1 82.5% 86.9% (many diffs)
22 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166535.1 82.5% 86.9% (many diffs)
23 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166536.1 82.5% 86.9% (many diffs)
24 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_016660.3 82.5% 86.9% (many diffs)
25 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166543.1 81.6% 85.9% (many diffs)
26 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166544.1 81.6% 85.9% (many diffs)
27 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166545.1 79.5% 83.7% (many diffs)
28 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166546.1 73.1% 57.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
354
ORF length:
288
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TGAGTCGAGC TCGAAGTCCA GCCAGCCCTT GGCCTCCAAG CAGGAAAAGG
121ACGGCACTGA GAAGCGGGGC CGGGGCAGGC CGCGCAAGCA GCCTCCGAAG GAGCCCAGCG
181AAGTGCCAAC ACCTAAGAGA CCTCGGGGCC GACCAAAGGG AAGCAAAAAC AAGGGTGCTG
241CCAAGACCCG GAAAACCACC ACAACTCCAG GAAGGAAACC AAGGGGCAGA CCCAAAAAAC
301TGGAGAAGGA GGAAGAGGAG GGCATCTCGC AGGAGTCCTC GGAGGAGGAG CAGTGCCCAA
361CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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