Construct: ORF ccsbBroadEn_00758

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010101.1_s300c1, BRDN0000391989
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMGA1 (3159)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319078.2 100% 100%
2 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319079.2 100% 100%
3 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319081.2 100% 100%
4 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319082.2 100% 100%
5 human 3159 HMGA1 high mobility group AT-hook 1 NM_145899.3 100% 100%
6 human 3159 HMGA1 high mobility group AT-hook 1 NM_145901.2 100% 100%
7 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319080.2 99% 99% 133_134insAGA
8 human 3159 HMGA1 high mobility group AT-hook 1 NM_001319077.2 89.7% 89.7% 101_102ins33
9 human 3159 HMGA1 high mobility group AT-hook 1 NM_002131.4 89.7% 89.7% 101_102ins33
10 human 3159 HMGA1 high mobility group AT-hook 1 NM_145902.3 89.7% 89.7% 101_102ins33
11 human 3159 HMGA1 high mobility group AT-hook 1 NM_145903.3 89.7% 89.7% 101_102ins33
12 human 3159 HMGA1 high mobility group AT-hook 1 NM_145905.2 89.7% 89.7% 101_102ins33
13 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001025427.3 91.9% 97.1% (many diffs)
14 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001039356.2 91.9% 97.1% (many diffs)
15 mouse 111241 Hmga1-rs1 high mobility group AT-hook... NM_001166476.1 91.9% 97.1% (many diffs)
16 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166535.1 91.9% 97.1% (many diffs)
17 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166536.1 91.9% 97.1% (many diffs)
18 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_016660.3 91.9% 97.1% (many diffs)
19 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166543.1 90.9% 96.2% (many diffs)
20 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166544.1 90.9% 96.2% (many diffs)
21 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166545.1 88.5% 93.6% (many diffs)
22 mouse 111241 Hmga1-rs1 high mobility group AT-hook... NM_001166477.1 82.5% 86.9% (many diffs)
23 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166537.1 82.5% 86.9% (many diffs)
24 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166539.1 82.5% 86.9% (many diffs)
25 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166540.1 82.5% 86.9% (many diffs)
26 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166541.1 82.5% 86.9% (many diffs)
27 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166542.1 82.5% 86.9% (many diffs)
28 mouse 15361 Hmga1 high mobility group AT-hook 1 NM_001166546.1 81.5% 66.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
387
ORF length:
321
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TGAGTCGAGC TCGAAGTCCA GCCAGCCCTT GGCCTCCAAG CAGGAAAAGG
121ACGGCACTGA GAAGCGGGGC CGGGGCAGGC CGCGCAAGCA GCCTCCGGTG AGTCCCGGGA
181CAGCGCTGGT AGGGAGTCAG AAGGAGCCCA GCGAAGTGCC AACACCTAAG AGACCTCGGG
241GCCGACCAAA GGGAAGCAAA AACAAGGGTG CTGCCAAGAC CCGGAAAACC ACCACAACTC
301CAGGAAGGAA ACCAAGGGGC AGACCCAAAA AACTGGAGAA GGAGGAAGAG GAGGGCATCT
361CGCAGGAGTC CTCGGAGGAG GAGCAGTGCC CAACTTTCTT GTACAAAGTt ggcattataa
421gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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