Construct: ORF ccsbBroadEn_00856
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008210.1_s300c1, BRDN0000396537
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CXCR2 (3579)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | NM_001168298.2 | 100% | 100% | |
| 2 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | NM_001557.4 | 100% | 100% | |
| 3 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_005246530.3 | 100% | 100% | |
| 4 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_017003990.1 | 100% | 100% | |
| 5 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_017003991.1 | 100% | 100% | |
| 6 | human | 3579 | CXCR2 | C-X-C motif chemokine recep... | XM_017003992.1 | 100% | 100% | |
| 7 | human | 3577 | CXCR1 | C-X-C motif chemokine recep... | NM_000634.3 | 81.5% | 75.2% | (many diffs) |
| 8 | human | 3580 | CXCR2P1 | C-X-C motif chemokine recep... | NR_002712.1 | 37.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1146
- ORF length:
- 1080
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AGATTTTAAC ATGGAGAGTG ACAGCTTTGA AGATTTCTGG AAAGGTGAAG 121 ATCTTAGTAA TTACAGTTAC AGCTCTACCC TGCCCCCTTT TCTACTAGAT GCCGCCCCAT 181 GTGAACCAGA ATCCCTGGAA ATCAACAAGT ATTTTGTGGT CATTATCTAT GCCCTGGTAT 241 TCCTGCTGAG CCTGCTGGGA AACTCCCTCG TGATGCTGGT CATCTTATAC AGCAGGGTCG 301 GCCGCTCCGT CACTGATGTC TACCTGCTGA ACCTAGCCTT GGCCGACCTA CTCTTTGCCC 361 TGACCTTGCC CATCTGGGCC GCCTCCAAGG TGAATGGCTG GATTTTTGGC ACATTCCTGT 421 GCAAGGTGGT CTCACTCCTG AAGGAAGTCA ACTTCTATAG TGGCATCCTG CTACTGGCCT 481 GCATCAGTGT GGACCGTTAC CTGGCCATTG TCCATGCCAC ACGCACACTG ACCCAGAAGC 541 GCTACTTGGT CAAATTCATA TGTCTCAGCA TCTGGGGTCT GTCCTTGCTC CTGGCCCTGC 601 CTGTCTTACT TTTCCGAAGG ACCGTCTACT CATCCAATGT TAGCCCAGCC TGCTATGAGG 661 ACATGGGCAA CAATACAGCA AACTGGCGGA TGCTGTTACG GATCCTGCCC CAGTCCTTTG 721 GCTTCATCGT GCCACTGCTG ATCATGCTGT TCTGCTACGG ATTCACCCTG CGTACGCTGT 781 TTAAGGCCCA CATGGGGCAG AAGCACCGGG CCATGCGGGT CATCTTTGCT GTCGTCCTCA 841 TCTTCCTGCT CTGCTGGCTG CCCTACAACC TGGTCCTGCT GGCAGACACC CTCATGAGGA 901 CCCAGGTGAT CCAGGAGACC TGTGAGCGCC GCAATCACAT CGACCGGGCT CTGGATGCCA 961 CCGAGATTCT GGGCATCCTT CACAGCTGCC TCAACCCCCT CATCTACGCC TTCATTGGCC 1021 AGAAGTTTCG CCATGGACTC CTCAAGATTC TAGCTATACA TGGCTTGATC AGCAAGGACT 1081 CCCTGCCCAA AGACAGCAGG CCTTCCTTTG TTGGCTCTTC TTCAGGGCAC ACTTCCACTA 1141 CTCTCTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1201 gttgcaacga ac