Construct: ORF ccsbBroadEn_01061
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001970.1_s300c1, BRDN0000389990
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NAB2 (4665)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4665 | NAB2 | NGFI-A binding protein 2 | NM_005967.4 | 100% | 100% | |
| 2 | human | 4665 | NAB2 | NGFI-A binding protein 2 | NM_001330305.2 | 87.8% | 87.8% | 1275_1276ins192 |
| 3 | mouse | 17937 | Nab2 | Ngfi-A binding protein 2 | NM_008668.2 | 89.2% | 95.6% | (many diffs) |
| 4 | mouse | 17937 | Nab2 | Ngfi-A binding protein 2 | NM_001122895.1 | 77.7% | 83.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1641
- ORF length:
- 1575
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA CAGAGCGCCT TCCCCCACAG CCGAGCAGCC GCCGGGCGGA GGGGACAGCG 121 CCCGCCGGAC CCTGCAGCCC AGACTCAAGC CCAGTGCCCG AGCCATGGCA CTGCCTCGGA 181 CGCTGGGGGA GCTGCAGCTG TACCGGGTCC TGCAGCGCGC CAACCTCCTT TCCTACTATG 241 AGACCTTCAT CCAGCAGGGA GGGGACGACG TGCAGCAGCT GTGTGAGGCG GGTGAGGAGG 301 AGTTTCTGGA GATCATGGCA CTTGTGGGCA TGGCCACCAA GCCCCTCCAT GTCCGGCGCC 361 TGCAGAAGGC ACTGAGAGAG TGGGCCACCA ATCCAGGGCT CTTCAGTCAA CCAGTGCCTG 421 CTGTTCCCGT CTCCAGCATC CCGCTCTTCA AGATCTCTGA GACTGCGGGT ACCCGGAAAG 481 GGAGCATGAG CAATGGGCAT GGCAGCCCAG GGGAAAAGGC AGGCAGTGCC CGCAGTTTTA 541 GCCCCAAGAG CCCCCTTGAA CTTGGAGAGA AGCTATCACC ACTGCCTGGG GGACCTGGGG 601 CAGGGGACCC CCGGATCTGG CCAGGCCGGA GCACTCCAGA GTCGGACGTT GGGGCAGGAG 661 GAGAAGAGGA GGCTGGCTCG CCCCCCTTCT CCCCCCCTGC AGGGGGAGGA GTCCCTGAGG 721 GGACTGGGGC TGGGGGGCTG GCAGCAGGTG GGACTGGGGG TGGTCCAGAC CGACTGGAGC 781 CAGAGATGGT ACGCATGGTG GTGGAAAGTG TGGAGAGGAT CTTCCGGAGC TTCCCAAGGG 841 GGGATGCTGG GGAGGTCACA TCCCTGCTAA AGCTGAATAA GAAGCTGGCA CGGAGCGTTG 901 GGCACATCTT TGAGATGGAT GATAATGACA GCCAGAAGGA AGAGGAGATC CGCAAATACA 961 GCATCATCTA TGGCCGTTTC GACTCTAAGC GGCGGGAGGG CAAGCAGCTC AGCCTGCACG 1021 AGCTCACCAT CAACGAGGCT GCTGCCCAGT TCTGCATGAG GGACAACACG CTCTTATTAC 1081 GGAGAGTGGA GCTCTTCTCT TTGTCCCGCC AAGTAGCCCG AGAGAGCACC TACTTGTCCT 1141 CCTTGAAGGG CTCCAGGCTT CACCCTGAAG AACTGGGAGG CCCTCCACTG AAGAAGCTGA 1201 AACAAGAGGT TGGAGAACAG AGTCACCCTG AAATCCAGCA GCCTCCCCCA GGCCCTGAGT 1261 CCTATGTACC CCCATACCGC CCCAGCCTGG AGGAGGACAG CGCCAGCCTG TCTGGGGAGA 1321 GTCTGGATGG ACATTTGCAG GCTGTGGGGT CATGTCCAAG GCTGACGCCG CCCCCTGCTG 1381 ACCTGCCTCT GGCATTGCCA GCCCATGGGC TATGGAGCCG ACACATCCTG CAGCAGACAC 1441 TGATGGACGA GGGGCTGCGG CTCGCCCGCC TCGTCTCCCA CGACCGCGTG GGCCGCCTCA 1501 GCCCCTGTGT GCCTGCGAAG CCACCTCTCG CAGAGTTCGA GGAAGGGCTG CTGGACAGAT 1561 GTCCTGCCCC AGGACCCCAT CCCGCGCTGG TGGAGGGTCG CAGGAGCAGC GTGAAAGTGG 1621 AGGCTGAGGC CAGCCGGCAG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1681 attgcttatc aatttgttgc aacgaac