Construct: ORF ccsbBroadEn_01092
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001244.1_s300c1, BRDN0000389628
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NFIL3 (4783)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4783 | NFIL3 | nuclear factor, interleukin... | NM_001289999.1 | 100% | 100% | |
| 2 | human | 4783 | NFIL3 | nuclear factor, interleukin... | NM_001290000.1 | 100% | 100% | |
| 3 | human | 4783 | NFIL3 | nuclear factor, interleukin... | NM_005384.3 | 100% | 100% | |
| 4 | human | 4783 | NFIL3 | nuclear factor, interleukin... | XM_017014743.1 | 100% | 100% | |
| 5 | human | 4783 | NFIL3 | nuclear factor, interleukin... | XM_017014744.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1452
- ORF length:
- 1386
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GCTGAGAAAA ATGCAGACCG TCAAAAAGGA GCAGGCGTCT CTTGATGCCA 121 GTAGCAATGT GGACAAGATG ATGGTCCTTA ATTCTGCTTT AACGGAAGTG TCAGAAGACT 181 CCACAACAGG TGAGGAGCTG CTTCTCAGTG AAGGAAGTGT GGGGAAGAAC AAATCTTCTG 241 CATGTCGGAG GAAACGGGAA TTCATTCCTG ATGAAAAGAA AGATGCTATG TATTGGGAAA 301 AAAGGCGGAA AAATAATGAA GCTGCCAAAA GATCTCGTGA GAAGCGTCGA CTGAATGACC 361 TGGTTTTAGA GAACAAACTA ATTGCACTGG GAGAAGAAAA CGCCACTTTA AAAGCTGAGC 421 TGCTTTCACT AAAATTAAAG TTTGGTTTAA TTAGCTCCAC AGCATATGCT CAAGAGATTC 481 AGAAACTCAG TAATTCTACA GCTGTGTACT TTCAAGATTA CCAGACTTCC AAATCCAATG 541 TGAGTTCATT TGTGGACGAG CACGAACCCT CGATGGTGTC AAGTAGTTGT ATTTCTGTCA 601 TTAAACACTC TCCACAAAGC TCGCTGTCCG ATGTTTCAGA AGTGTCCTCA GTAGAACACA 661 CGCAGGAGAG CTCTGTGCAG GGAAGCTGCA GAAGTCCTGA AAACAAGTTC CAGATTATCA 721 AGCAAGAGCC GATGGAATTA GAGAGCTACA CAAGGGAGCC AAGAGATGAC CGAGGCTCTT 781 ACACAGCGTC CATCTATCAA AACTATATGG GGAATTCTTT CTCTGGGTAC TCACACTCTC 841 CCCCACTACT GCAAGTCAAC CGATCCTCCA GCAACTCCCC GAGAACGTCG GAAACTGATG 901 ATGGTGTGGT AGGAAAGTCA TCTGATGGAG AAGACGAGCA ACAGGTCCCC AAGGGCCCCA 961 TCCATTCTCC AGTTGAACTC AAGCATGTGC ATGCAACTGT GGTTAAAGTT CCAGAAGTGA 1021 ATTCCTCTGC CTTGCCACAC AAGCTCCGGA TCAAAGCCAA AGCCATGCAG ATCAAAGTAG 1081 AAGCCTTTGA TAATGAATTT GAGGCCACGC AAAAACTTTC CTCACCTATT GACATGACAT 1141 CTAAAAGACA TTTCGAACTC GAAAAGCATA GTGCCCCAAG TATGGTACAT TCTTCTCTTA 1201 CTCCTTTCTC AGTGCAAGTG ACTAACATTC AAGATTGGTC TCTCAAATCG GAGCACTGGC 1261 ATCAAAAAGA ACTGAGTGGC AAAACTCAGA ATAGTTTCAA AACTGGAGTT GTTGAAATGA 1321 AAGACAGTGG CTACAAAGTT TCTGACCCAG AGAACTTGTA TTTGAAGCAG GGGATAGCAA 1381 ACTTATCTGC AGAGGTTGTC TCACTCAAGA GACTTATAGC CACACAACCA ATCTCTGCTT 1441 CAGACTCTGG GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1501 caatttgttg caacgaac